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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatgatttttcattctgaattccattgatgtgcttttcatgttcgtctgtctgttctcataaaagtccgtttatattttttggcag

Basic information

species Glycine max
transcript GLYMA12G08720.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814309|gb|BQ298787.1|BQ298787
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGNTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|57574463|gb|CX547438.1|CX547438
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|207683223|gb|GD665930.1|GD665930
EST:     TCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|22932418|gb|BU549557.1|BU549557
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|20814308|gb|BQ298786.1|BQ298786
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|13563545|gb|BG551765.1|BG551765
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|58016371|gb|CX703113.1|CX703113
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTCTC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|58021674|gb|CX708415.1|CX708415
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|14991068|gb|BI316741.1|BI316741
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGCCCACTGTGCATGTGC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|58022824|gb|CX709565.1|CX709565
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|58023371|gb|CX710112.1|CX710112
EST:     TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC