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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAGTAATGTTTACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATGgtaatacttttttcccattggatattctttctctaaaatctgattgctttgttaatgttttttttttcttttttgagcag

Basic information

species Glycine max
transcript GLYMA12G08720.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814309|gb|BQ298787.1|BQ298787
EST:     ACAACGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATG                         CTTTACCCATTTGTTGTACTTGTGGGAGGAGTGCTTGTGTG
genomic: ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATGgtaatacttt ... ttttgagcagCTTTACCCATTTGTTGTACTTGTGGGAGGAGTGCTTGTGTG
EST: gi|20814308|gb|BQ298786.1|BQ298786
EST:     ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATG                         CTTTACCCATTTGTTGTACTTGTGGGAGGAGTGCTTGTGTG
genomic: ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATGgtaatacttt ... ttttgagcagCTTTACCCATTTGTTGTACTTGTGGGAGGAGTGCTTGTGTG
EST: gi|58021674|gb|CX708415.1|CX708415
EST:     ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATG                         CTTTACCCATTTGTTGTACTTGTGGGAGGAGTGCTTGTGTG
genomic: ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATGgtaatacttt ... ttttgagcagCTTTACCCATTTGTTGTACTTGTGGGAGGAGTGCTTGTGTG
EST: gi|207781927|gb|GD751860.1|GD751860
EST:     ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAANG                         CTTTACCCATTTGTTTGTACTTGTGGGAGGAGTGCTTGTGTG
genomic: ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATGgtaatacttt ... ttttgagcagCTTTACCCATTTG-TTGTACTTGTGGGAGGAGTGCTTGTGTG
EST: gi|16996551|gb|BM085923.1|BM085923
EST:     ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGGAATG                         CTTTACCCATTTGTTGTACTTGGGGGAGGAGTGCTTGTGTG
genomic: ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATGgtaatacttt ... ttttgagcagCTTTACCCATTTGTTGTACTTGTGGGAGGAGTGCTTGTGTG
EST: gi|58023371|gb|CX710112.1|CX710112
EST:     ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATG                         CTTTACCCATTTGTTGTACTTGTGGGAGGAGTGCTTGTGTG
genomic: ACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATGgtaatacttt ... ttttgagcagCTTTACCCATTTGTTGTACTTGTGGGAGGAGTGCTTGTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTAGTAATGTTTACAAGGTTGTGAAGGGAAAGAATGGAAGCATGCCACTTGCATTGGCAATGgtaatacttttttcccattggatattctttctctaaaatctgattgctttgttaatgttttttttttcttttttgagcag

- - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - TGGAAG