1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AAGCCACGCTGTTCTTTCAAATCGTAACCGAAGAATGAAGATGGTGCGCTGCTGTCGGTGCTTCGCCTGAGTCTCATTCCGTTTGCGCCCACTATCAgtacgcctctattctccttctttttttgttcgttttctgtttttcgttcttgggcttttctttctgggttccgttcttagtgtttctttcgtttctgact...
species | Glycine max |
transcript | GLYMA12G08720.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCGCCTGAGTCTCATTCCGTTTGCGCCCACTATCA CAGGTTGTGCTGAGGCTTAACTGGTTCTTGAAGCATATTTCAGAGTTTTATEST: gi|208250464|gb|GE044673.1|GE044673
genomic: CTTCGCCTGAGTCTCATTCCGTTTGCGCCCACTATCAgtacgcctct ... caaaattcagCAGGTTGTGCTGAGGCTTAACTGGTTCTTGAAGCATATTTCAGAGTTTTAT
EST: GCTGCTGTCGGTGCTTCGCCTGAGTCTCATTCCGTTTGCGCCCACTATCA CAGGTTGTGCTGAGGCTTAACTGGTTCTTGAAGCATATTTCAGAGTTTTATEST: gi|193655890|gb|FK605274.1|FK605274
genomic: GCTGCTGTCGGTGCTTCGCCTGAGTCTCATTCCGTTTGCGCCCACTATCAgtacgcctct ... caaaattcagCAGGTTGTGCTGAGGCTTAACTGGTTCTTGAAGCATATTTCAGAGTTTTAT
EST: GCTGCTGTCGGTGCTTCGCCTGAGTCTCATTCCGTTTGCGCCCACTATCA CAGGTTGTGCTGAGGCTTAACTGGTTCTTGAAGCATATTTCAGAGTTTTAT
genomic: GCTGCTGTCGGTGCTTCGCCTGAGTCTCATTCCGTTTGCGCCCACTATCAgtacgcctct ... caaaattcagCAGGTTGTGCTGAGGCTTAACTGGTTCTTGAAGCATATTTCAGAGTTTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCCACGCTGTTCTTTCAAATCGTAACCGAAGAATGAAGATGGTGCGCTGCTGTCGGTGCTTCGCCTGAGTCTCATTCCGTTTGCGCCCACTATCAgtacgcctctattctccttctttttttgttcgttttctgtttttcgttcttgggcttttctttctgggttccgttcttagtgtttctttcgtttctgact
- - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc