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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttagaaaacactttgattatctatctggtttcatttgagtgattgattgctattatttttgctacacgataactgatataagcataatttattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG

Basic information

species Glycine max
transcript GLYMA12G08720.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814309|gb|BQ298787.1|BQ298787
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|57574463|gb|CX547438.1|CX547438
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|22932418|gb|BU549557.1|BU549557
EST:     CTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: CTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|20814308|gb|BQ298786.1|BQ298786
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|13563545|gb|BG551765.1|BG551765
EST:     CTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: CTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|58016371|gb|CX703113.1|CX703113
EST:     TGGCACAATTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|58021674|gb|CX708415.1|CX708415
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|14991068|gb|BI316741.1|BI316741
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|58022824|gb|CX709565.1|CX709565
EST:     TGGCACACTTATGTGATGAACNTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|58023371|gb|CX710112.1|CX710112
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgctattatttttgctacacgataactgatataagcataatttattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG
                          aactgat  putative branch site (score: 3)
                                           tttatttt  putative PPT
                        ataactgatataagca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagaaaacactttgattatctatctggtttcatttgagtgattgattgctattatttttgctacacgataactgatataagcataatttattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTAAATGATGG

- - gaaaacac
- - - - - - - - - - - - tctggtt
- - - - - - - - - - - - - - - - - - tgagtga
- - - - - - - - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctacac