Sequence
atgc intronic sequence ATGC exonic sequenceACATTTGATGCTGTTGATGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcctgcattgtttttttcattctattgtttttcattatgcatacctgtttgttattaatgaagatgttttcaactgtatttgcag
Basic information
species | Glycine max |
transcript | GLYMA12G08720.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 5
ACATTTGATGCTGTTGATGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcctgcattgtttttttcattctattgtttttcattatgcatacctgtttgttattaatgaagatgttttcaactgtatttgcag
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ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatttttcccatgttcctcctttgattatctgttttca-gtttgtttctagattttt--ctgacatgtgttccaata---ttgcag
upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0010g00950.t01 (Vitis vinifera), 5'ss of exon 6
ACATTTGATGCTGTTGATGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcctgcattgtttttttcattctattgtttttca-ttatgcatacct--gtttgttattaatgaagatgttttcaactgtatttgcag
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ACTTTTGATGCTGTTGATGGGAAGCAAGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccccttgtcatatatcttattttggcattttgaagttctgaatttcaaagggagatatatattgacacatgatttattgcag------
upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S269_30V6.1 (Physcomitrella patens), 5'ss of exon 6
ACATTTGATGCTGTTGATGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtga----ttttcctgcattgtt---tttttcattctattgtttttcattatgcatacctgtttg-ttattaatgaagatgttttcaactgtatttgcag
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ACCTTTGATGCTGTTGATGGGAAACAAGCTAGGCGGACAAATTCGTCGAGTCCTCTTGGAGAACTTTTTGATCACGgtaaacagctttgttgaactcgtaagctgctggtggatttatcaggcatgttgtcccttagttcacttatcagtgcgtaggcactcttacatatgtaaat
upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S68_234V6.1 (Physcomitrella patens), 5'ss of exon 5
ACATTTGATGCTGTTGATGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgt----gattttcctgcattgtttttttcattctattgtttttcattatgcatacctgtttgttattaatgaagatgttttcaact-gtatttgcag-----
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ACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGCCCTCTCGGAGAGCTTTTTGATCACGgtagaggatcttacggaactcacaatttgattgtagaaatattag--agacatcactctacaatctcgttcaatattttttagattcgtttatgtatgtaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16996551|gb|BM085923.1|BM085923EST: AAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATG GGTGTGATGCACTTGCTTGCACA
genomic: AAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcc ... gtatttgcagGGTGTGATGCACTTGCTTGCACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATTTGATGCTGTTGATGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcctgcattgtttttttcattctattgtttttcattatgcatacctgtttgttattaatgaagatgttttcaactgtatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT