1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tgggtgtagtatagctcatcctaataaaaattattggttcatatatagttaatgttttgataaatcactatttgactttattgttctttctgaatttcagGAATCCCGACATTCAAAGCTATATTGTGTTTAATGATAGCTTTTGGTGTTACACCAACAGTCACATGCAA
species | Glycine max |
transcript | GLYMA12G08720.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAATTTGAAAAGTCTTTGCCATTCTTAAATT-GCTTTCCTTATCTTGGGG GAATCCCGACATTCAAAGCTATATTGTGTTTAATGATAGCTTTTGGTGTTAEST: gi|16996551|gb|BM085923.1|BM085923
genomic: CAATTTGGAAAGTCTTTGCCATTCTTAAATTGGC-TTCCTTATCTTGGGGgtaagatgtc ... tgaatttcagGAATCCCGACATTCAAAGCTATATTGTGTTTAATGATAGCTTTTGGTGTTA
EST: GCAATTTGGAAAGTCTTTGCCATTCTTAAATTGGCTTCCTTATCTTGGGG GAATCCCGACATTCAAAGCTATATTGTGTTTAATGATAGCTTTTGGTGTTAEST: gi|58023371|gb|CX710112.1|CX710112
genomic: GCAATTTGGAAAGTCTTTGCCATTCTTAAATTGGCTTCCTTATCTTGGGGgtaagatgtc ... tgaatttcagGAATCCCGACATTCAAAGCTATATTGTGTTTAATGATAGCTTTTGGTGTTA
EST: CTTAAATTGGCTTCCTTATCTTGGGG GAATCCCGACATTCAAAGCTATATTGTGTTTAATGATAGCTTTTGGTGTTA
genomic: CTTAAATTGGCTTCCTTATCTTGGGGgtaagatgtc ... tgaatttcagGAATCCCGACATTCAAAGCTATATTGTGTTTAATGATAGCTTTTGGTGTTA
tagttaatgttttgataaatcactatttgactttattgttctttctgaatttcagGAATCCCGACATTCAAAGCTATATTGTGTTTAATGATAGCTTTTGGTGTTACACCAACAGTCACATGCAA
atttgac putative branch site (score: 4)
ctttattgttctttct CT-rich tract
aatgttttgataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggtgtagtatagctcatcctaataaaaattattggttcatatatagttaatgttttgataaatcactatttgactttattgttctttctgaatttcagGAATCCCGACATTCAAAGCTATATTGTGTTTAATGATAGCTTTTGGTGTTACACCAACAGTCACATGCAA
tgggtgt
- - - - - - - ctcatcc
- - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg