Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTATTTGTCACCATCAGACATCATGGGGAAATATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagttgtattttaaatttgaaaacttgttggcttcttttttattttctaattaataatgacaagctgcctttttttatgccatgttttctttgg...

Basic information

species Glycine max
transcript GLYMA12G08720.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814309|gb|BQ298787.1|BQ298787
EST:     ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTNCTGA-ATCTTGTG                         GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: gi|57574463|gb|CX547438.1|CX547438
EST:     CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG                         GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
genomic: CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: gi|20814308|gb|BQ298786.1|BQ298786
EST:     ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG                         GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: gi|58016371|gb|CX703113.1|CX703113
EST:     CACATCTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG                         GGGAGGATGATTTTGGCACAATTATGTGATGAACCTAAGGGTCTGAAAACT
genomic: CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: gi|58021674|gb|CX708415.1|CX708415
EST:     ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG                         GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: gi|14991068|gb|BI316741.1|BI316741
EST:     ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG                         GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: gi|58022824|gb|CX709565.1|CX709565
EST:     CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG                         GGGAGGATGATTTTGGCACACTTATGTGATGAACNTAAGGGTCTGAAAACT
genomic: CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: gi|207781927|gb|GD751860.1|GD751860
EST:     ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG                         GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGG
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGG
EST: gi|58023371|gb|CX710112.1|CX710112
EST:     ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG                         GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT