1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
gtgatctatcctaaccctcaaataaactcttttgattctctgctcaatgaggttggaaccattatttgaacgctatgatgaattctcttcttcctgtcgttttttctttgcagTTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTTGAGGCACAAAAAGAGGTGAAGGCCAAAGAGCAGGAAGAGAAGGATGTCA
species | Arabidopsis thaliana |
transcript | AT3G08530.1 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAG TTTATCCGAGAEST: gi|47829444|gb|CK119128.1|CK119128
genomic: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAGgtgatctatc ... ttctttgcagTTTATCCGAGA
EST: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAG TTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTTEST: gi|116468291|gb|EG510883.1|EG510883
genomic: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAGgtgatctatc ... ttctttgcagTTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTT
EST: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAG TTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTTEST: gi|86083413|gb|DR379172.1|DR379172
genomic: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAGgtgatctatc ... ttctttgcagTTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTT
EST: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAG TTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTTEST: gi|47828467|gb|CK118151.1|CK118151
genomic: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAGgtgatctatc ... ttctttgcagTTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTT
EST: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAG TTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTT
genomic: TTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAGgtgatctatc ... ttctttgcagTTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTT
ccattatttgaacgctatgatgaattctcttcttcctgtcgttttttctttgcagTTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTTGAGGCACAAAAAGAGGTGAAGGCCAAAGAGCAGGAAGAGAAGGATGTCA
ttctcttcttcctgtc CT-rich tract
ttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatctatcctaaccctcaaataaactcttttgattctctgctcaatgaggttggaaccattatttgaacgctatgatgaattctcttcttcctgtcgttttttctttgcagTTTATCCGAGAGTACTCTGGCAAAGTGGATGAGCTAATAAAGGACAAGCTTGAGGCACAAAAAGAGGTGAAGGCCAAAGAGCAGGAAGAGAAGGATGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG