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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtacatgttttttaccatttttaccggccaaatagatttatcatcttctcaccttccaacttcttttccttttgatttgtgcagCATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAG

Basic information

species Arabidopsis thaliana
transcript AT3G08530.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GRMZM2G477336_T01 (Zea mays), 3'ss of exon 5
---gttggtacatgttttttac-------catttttaccggccaaatagatttatcatcttctca---ccttccaacttcttttccttttgatttgtgcagCATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAG
   ||   | |  |   |  |        | |||  |  ||   |   ||| | ||  ||||  |   |  |  ||||    || | |||  |   ||||||||||||||||||| |||||||| || ||||  |||||||| || ||||  || || ||||||
gttgtacttgcgagccctccaggtcagtacctttgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattttgta-atgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
---gttggtacatgtttttta--ccatttttaccggccaaatagatttatcatcttc---tcaccttccaacttcttttccttttgattt----gtgcagCATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAG
   ||   | |  |   |  |   || |     ||      |  |  |   |||| |   ||   ||||   ||   |  | ||  ||||     ||||||||||||||||||| |||||||| || ||||  |||||||| || ||||  || || ||||||
gttgtacttgcgagccctccaggtcagtaccttcgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattttgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 16
-------gttggtacatgttttttaccatttttaccggccaaatagatttatcatcttctcaccttccaacttcttttccttttgatttgtgcagCATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAG
        |    | |||| |||||   || |||| ||     |   || | |       |  ||      ||  || | || |  || |||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| || |||||||||
gtaatgactcaccaaatgtgtttta---ttcttactggttttcttatttaacccaaaggccttctcttttattgattacattatttttggtgcagCATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAG

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 16
-------gttggtacatgttttttaccattttta-ccggccaaatagatttatcatcttctcaccttccaacttcttttccttttgatttgtgcagCATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAG
        |    | |||| |||||  |||  |      |  | |  |   |  | | |      || |   ||    |  |||||    |||||||||||| ||||||| || |||||||||||||| |||||||| |||||||| || |||||||||
gtaatgactcaccaaatgtgttttattattactggttttcttatttaacccaaaagccttctcttttactgattacactatttttg----gtgcagCATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAG

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 17
----------------------gttggtacatgttttttaccatttttaccggccaaatagatttatcatcttctcaccttccaacttcttttccttttgatttgtgcagCATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAG
                       ||      | ||||||||| ||||||  |    |  | ||| || ||         ||  |||        ||| |  ||||||||||||||  | ||||| || ||||||||||| || ||||| || |||||||| || |||||||||
gtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaaca-------cttatattttgtgcagCATTATACTGAGTTGCCAGATATAAAACGCGTCATTGTGAATACACATGCAATTGAGCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatagatttatcatcttctcaccttccaacttcttttccttttgatttgtgcagCATTACTCAGAGTTACCTGATATAAAACGTGTAATTGTAAACACACATGCTATCGAGCCACAG
              tcttctcaccttccaa  CT-rich tract
      atttatcat  TA-rich tract