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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAGgttgaaaatagttgccaccttgtatctctccgtttttttctctactcaccttctttccccagactgtttaaatcatttttcaacacag

Basic information

species Arabidopsis thaliana
transcript AT3G08530.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 16
AGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAGgttgaaaatagttgccaccttgtatctctccgtttttttctctactcaccttctttccccagactgtttaaatcatttttcaacacag---------------------------------
|||||  |||| ||||| || ||  ||||||| ||||||||  |||||||||| || || |||||||||||||| ||||| ||||||   | |  || || |  |   |    || |||   | |  | |  | |  |   |   | ||  ||  | | || | |      |                                 
AGAAACATGATACGTGAGGCAACAGCTTTCCTGCTGGATGTTTTAAAGCCAAACTTGCCGGAGCATGCTTTTCTTCAAACCAAGgttagcagttttttcc-caataagttcggccttttacctttgcattgccatgttgctcagtggcttcttttacctttatactgttgtgttgctcagtagtttctgtttgaattgattgtag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 16
AGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAGgttgaaaatagttgcc-----------accttgtatctctccgttttt---ttctctactcaccttctttcccc--agactgtttaaatcatttttcaacacag----------------------
|||||  |||| ||||| || ||  ||||||| ||||||||  |||||||||| || || |||||||||||||| ||||| ||||||   | |  || ||            |||| |  || | | ||      ||    | |  | |  ||| ||   | ||||||    |  | || |     ||                      
AGAAACATGATACGTGAGGCAACAGCTTTCCTGCTGGATGTTTTAAAGCCAAACTTGCCGGAGCATGCTTTTCTTCAAACCAAGgttagcagttttttcccaataagttaggccttttgcctttgcattgccatgttgctcagtggcttcttttacctttatactgttgtgtttgtgttgctcagtagtttctgtttgaattggttgtag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 16
AGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAGgttgaaaatagttgccaccttgtatctctccgtttttttctctactcaccttctttccccagactgtttaaatcatttttcaacacag
|| ||  |||| |||||||| ||  | ||  |  | |||||  | |||||||||||||||||||||| ||| |||||||| ||||||    |   ||  |  ||  |     |   || ||||| ||| ||| | | |||        |   |||    | ||     ||||
AGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAGgtt----acttttttcctctgatgcaatt---ttattttcactattcatcatttttttttcagttccataacatttcttgttttacag