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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtgaatccttttggtcatcctggtttgcgttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G08530.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 22
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtg-aatccttttggtcatcctggtttgcgttcataa-ttatgtctgtttagttctggaaactctaatatg--tttctgctttttcag------------------------------
| ||||||||||| |||||||||||||| || || ||  | ||||| ||||| |||||  | ||||||||||| ||||| || || ||||| ||||||||||   || ||||   | ||| ||  || |      |  ||| |    | |     || | ||    |||||  ||| || ||  |                                 
TACTTGATGATGAGTGCCCTGAAGATTTCATTAAGGGTTTGATTCTGTCTGTCCGTTCTCTCCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtatgattctttatattatcttgtattccacagccagcttaagggcatgtgcacatgcacacaaacatatgcttttttgtttcgttgctgatctcatcttttatatttcttttttcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 22
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtg-aatccttttggtcatcctggtttgcgttcata-attatgtctgtttagttctggaaactctaatatg--tttctgctttttcag------------------------------
| ||||||||||| |||||||||||||| || || ||  | ||||| ||||| |||||  | ||||||||||| ||||| || || ||||| ||||||||||   || ||||   | ||| ||  || |      | |||| |    | |      | | ||    |||||  ||| || ||| |                                 
TACTTGATGATGAGTGCCCTGAAGATTTCATTAAGGGTTTGATTCTGTCTGTCCGTTCTCTCCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtatgattctttatattatcttgtattccacaaccagattaagggcatgtgcacacgcacacaaacatatgcttttttgttttgttgctgacctcatcttttatatttcttttttcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtgaatccttttggtcatcctggtttgc---gttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcag---
| || |||||||||||||| |||||||| || || ||  | |||||||||||||||||  ||||||||||||| ||||| || || ||||| ||||||||||      | ||  |      ||| |||   ||    | ||     |      ||   |    ||  || |||||     | |  |    
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GRMZM2G111355_T02 (Zea mays), 5'ss of exon 2
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtgaatccttttggtcatcctggtttgc--gttcata---attatgtctgtttagttctggaaactctaatatgtttctgct----ttttcag------
| ||||||||||||||||||||||||||||| || ||  | || ||||||||||||||  | || |||||||| ||  | || || ||||||||||||||||   |  ||    || |||  |||| |   |||| |    | | |   |   || | || |   || |  ||| |  || |    |  |||       
TACTTGATGATGAATGCCCTGAAGATTTTATCAAGGGTTTGATCCTCTCTGTTCGTTCTCTCCTCCCTGTTGAGCCTTTGGTTGATGAATGTGAGAAGAGgtttgtttttcatatcctcccagtttacttattcacatgagtgaaggtagccaagatgtgcatg-tccataatgctcttggtaaaatcatcattgacag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 8
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtgaatccttttggtcatcctggtttgcgttcataattatgtc-tgtttagttctggaaactctaatatgtttctgctttttcag---------------
| |||||||||||||||||| |||||||||| || ||  | || || | |||||||||  | || |||||||| ||  | || || ||||||||||||||||   |  ||    ||   |  |||| | |    |  |  ||| |      | ||     ||   |    ||  || | |   |                
TACTTGATGATGAATGCCCTAAAGATTTTATCAAGGGTTTGATCCTATTTGTTCGTTCTCTCCTCCCTGTTGAGCCTTTGGTTGATGAATGTGAGAAGAGgtttgtttttcatatccctccagtttacttattcacatgggtcgttccccctcctcccccctaccaagaattgttggtctcatacgtttgatatgtgaat

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 22
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtga-atccttttggtcatcctggtttgcgttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcag---
|||| |||||||||||| | ||||||||||| |||||| | || || |||||||||||||| || || || || || ||||| ||||||||||||||||||||   |  |     | |||||    || ||| ||   | ||  |  ||  ||||    | | ||   ||| |||  ||  |  |   
TGCTAGATGATGAATGCGCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCATTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGgtggtgttttccctttgatccta---tgtgtt-attgctttgcattcttgtttctt---attttatcctgtgtctttttgatatgcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 22
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtga-atccttttggtcatcctggtttgcgttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcag---
   | |||||||||||| | ||||||||||| |||||| | || || |||||||||||||| || || || || || ||||| ||||||||||||||||||||   |  |     | |||||    || ||| ||   | ||  |  ||  ||||    | | ||   ||| |||  ||  |  |   
---TAGATGATGAATGCGCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCATTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGTGgtgttttccctttgatccta---tgtgtt-attgctttgcattcttgtttctt---attttatcctgtgtctttttgatatgcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 21
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgt-gaatccttttggtcatcctg-gtttgcgttcataatt--atgtctgtttagttctggaaactctaatatgtttctgctttttcag
|  | ||||||||||| || ||||||||||| |||||| | ||||||||||||||||| || || || || || || ||||| ||||| ||||||||||||| | ||| |||   | |||||   |||   ||  |  |   || |||| ||| | |  |  ||| |   |||               
TTTTAGATGATGAATGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTACTGCCAGTGGAGCCCCTTGTGGAGGAGTGTGAGAAGAGgtagtatcttttctctaatcctacatttctttttgtgctcgcatttctgattattccgtggtact-tggcatgcag------------

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 21
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgt-gaatccttttggtcatcctggtttgcgttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcag
|  | |||||||||||||| ||||||||||| |||||| | ||||||||||||||||| || || || || || || ||||| ||||| ||||| ||||||| | |||  ||   | |||||   || | ||     || ||      |   |    |  || |  ||  |||||   | | |||
TTTTAGATGATGAATGCCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTACTGCCAGTGGAGCCTCTTGTGGAGGAGTGTGAAAAGAGgtagtatctgttctctaatccttcattacttt-----ttgtgctcacatttctgattattctgtggtacttttcttggtatgcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 22
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtga-atccttttggtcatcctggtttgcgttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcag
   | |||||||| ||| | ||||||||||| |||||| | || || |||||||||||||| || || || || || ||||| ||||||||||||||||||||   |        | |||||   |    ||  |     |   |||||  |  |  |  || |     | || |   | | |||
---TAGATGATGAGTGCGCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCATTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGTGgtgtttgccctttgatcctaagtgttattgctttgcgttcgtgtttcttattttatcctgtg----gctttttgatatgcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 22
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtgaatccttttggtcat---cctggtttgcgttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcag
|||| ||||||||||| || |||||||| || ||||| || ||||| ||||| || ||  ||||||||||||| || ||||| || ||||||||||||||||||    |      |||   ||  ||| | |||||      | ||| |||| |||       | |  | ||  | || |||| |||
TGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGCTTCCTGTTGAGCCCCTTGTGGATGAATGTGAGAAGAGgtgatgtgtccctaccatatgccctgttcgggttcac-----tttctttttacttcaattgcttatgctttgcatgtggtttt-cag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: EFJ24508 (Selaginella moellendorffii), 5'ss of exon 22
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtgaatccttttggtcatcctggtttgcgttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcag
|  | ||||||||||| ||||| ||||||||||||   ||||| ||||||||||| || || || || ||||| || ||||| ||| |||| |||||  |||      ||| | |  | |  || |    |||| |||  |  |  ||   | |   |                          
TTTTAGATGATGAATGTCCTGAGGATTTTATAAAAAATCTCATCCTCTCTGTTCGATCGTTACTACCGGTTGAGCCTCTTGTTGAGCAATGCGAGAAACGgt---ctgtttcgttttttcatgtat---ctcattattgagcttaattttcttttccag-------------------------