1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
gtacttgattttttcctttgatctaaaacccataacggtttcctcgaattcgtagttcataatccacttatcttgatgttcactttttacttcaatatttatgtagCTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAGCCAAAGCAAAGTTGAAATCACATCAGATGCCTGAGCAG
species | Arabidopsis thaliana |
transcript | AT3G08530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCAGACTCTGCTCTTATGAACCCAAACTCGAAGATCCTTGCCTTGAAAG CTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAGEST: gi|116430170|gb|EG472762.1|EG472762
genomic: TGCAGACTCTGCTCTTATGAACCCAAACTCGAAGATCCTTGCCTTGAAAGgtacttgatt ... atttatgtagCTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAG
EST: TGCAGACTCTGCTCTTATGAACCCAAACTCGAAGATCCTTGCCTTGAAAG CTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAGEST: gi|116379678|gb|EG422270.1|EG422270
genomic: TGCAGACTCTGCTCTTATGAACCCAAACTCGAAGATCCTTGCCTTGAAAGgtacttgatt ... atttatgtagCTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAG
EST: TGCAAACTCTGCTCTTATGAACCCAAACTCGAAAATCCTTGCCTTGAAAG CTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAGEST: gi|116430172|gb|EG472764.1|EG472764
genomic: TGCAGACTCTGCTCTTATGAACCCAAACTCGAAGATCCTTGCCTTGAAAGgtacttgatt ... atttatgtagCTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAG
EST: TGCAGACTCTGCTCTTATGAACCCAGACTCGAAGATCCTTGCCTTGAAAG CTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAGEST: gi|116435872|gb|EG478464.1|EG478464
genomic: TGCAGACTCTGCTCTTATGAACCCAAACTCGAAGATCCTTGCCTTGAAAGgtacttgatt ... atttatgtagCTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAG
EST: TGCAGACTCTGCTCTTATGAACCCAAACTCGAAGATCCTTGCCTTGAAAG CTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAG
genomic: TGCAGACTCTGCTCTTATGAACCCAAACTCGAAGATCCTTGCCTTGAAAGgtacttgatt ... atttatgtagCTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAG
gtagttcataatccacttatcttgatgttcactttttacttcaatatttatgtagCTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAGCCAAAGCAAAGTTGAAATCACATCAGATGCCTGAGCAG
tcttgat putative branch site (score: 4)
tttttacttcaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgattttttcctttgatctaaaacccataacggtttcctcgaattcgtagttcataatccacttatcttgatgttcactttttacttcaatatttatgtagCTCAAGTTCCAGGAACTACTCAGGATCATCTACAGATATTTAACATTGAAGCCAAAGCAAAGTTGAAATCACATCAGATGCCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG