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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTGAGCAACTTGGTGTTGATGCATGTATTAAGCTCTTTGAGCAGTTCAAGTCATATGAAGGGCTATACTTTTTCCTAGGTTCATATTTGAGTATGAGgtgatatagataaaatctgatctcgtttctgtaaacaagcacgattcttgtatttatatgcttatgtttacaatgtttctctctgtgcgatag

Basic information

species Arabidopsis thaliana
transcript AT3G08530.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
ACTGTGAGCAACTTGGTGTTGATGCATGTATTAAGCTCTTTGAGCAGTTCAAGTCATATGAAGGGCTATACTTTTTCCTAGGTTCATATTTGAGTATGAGgtgat------atagata-aaatctgatctcgtttctgtaaacaagc-acgattcttgtat--------ttatatgcttatgtttac-aatgtttctctctgtgcgatag--------
| ||||| ||| | || |||||||| || || ||||| ||||||||||||| ||||||||||||||| || |||||||| || |||||||||||    |||| ||      ||   || | | ||| | | | |   ||   ||||  | |    |||||         || | || |    |   | ||| ||| | ||      |           
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattccttcatttttatagaactgttttggctg--gtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 19
ACTGTGAGCAACTTGGTGTTGATGCATGTATTAAGCTCTTTGAGCAGTTCAAGTCATATGAAGGGCTATACTTTTTCCTAGGTTCATATTTGAGTATGAGgtgata--tagataaaatctgatctcgttt---ctgtaaacaagc-acgattcttgtat--------ttatatgcttatgtttacaatgtttctctctg----tgcgatag
| ||||| ||| | || |||||||| || || ||||| ||||||||||||| ||||||||||||||| || |||||||| || |||||||||||    |||| |    |  ||    |  || ||  |||     ||  |||||  | |    |||||         || | ||||      ||  || ||| || |||    || || ||
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaactctttcatgtttttagaactgttttggctggtggacaagtgatgcaatttgtaaaggggatattgtctgctatcagctaatatttttttccctgaacttgggacag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 20
ACTGTGAGCAACTTGGTGTTGATGCATGTATTAAGCTCTTTGAGCAGTTCAAGTCATATGAAGGGCTATACTTTTTCCTAGGTTCATATTTGAGTATGAGgtgatat----------agataaaatctgatctcgtttctgtaaacaagcacgattc--ttg------tattta-tatgcttatgtttaca-atgtttctctctgtgcgatag-----
| ||||||||| | ||||||||||| || || || || |||||||| || | |||||||||||| || ||||||||||| || ||||| |||||    |||| ||            | | |||| ||  | |   |  ||  || |  |   |||   |||      |||  | | |  || || | |   ||||| ||||   |   || |     
ATTGTGAGCAATTGGGTGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAAGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaaacttgtttttctgttggtaatagacctcatttaattgagatattatccaatgtatttctgctgatgtatgttcctctaaataatatggaacag