Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaaaatagttgccaccttgtatctctccgtttttttctctactcaccttctttccccagactgtttaaatcatttttcaacacagGTTCTGGAGATAAATTTGGTAACTTTTCCTAATGTGGCTGATGCGGTATTAGCAAATGGGATGTTCACCCACTATGACCGGCCTCGCATTGCTCAACTTT

Basic information

species Arabidopsis thaliana
transcript AT3G08530.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
gttgaaaatagttgccaccttgtatct-ctccgtttttttctctactcaccttctttccccagactgtttaaatcat----ttttcaacacagGTTCTGGAGATAAATTTGGTAACTTTTCCTAATGTGGCTGATGCGGTATTAGCAAATGGGATGTTCACCCACTATGACCGGCCTCGCATTGCTCAACTTT
        | |        |   ||||  |  |    |||  ||    |  |||||||     | ||||   ||  |     |  |    |||||  ||||||||||| |||| ||||| || ||||| ||||||||  |||| || ||||| ||||||| ||| |||||||| ||||| ||||| |||||||
-----gtgtggcctttgtttctcatctgttatgggcattttactctgaaaattctttctttgaagtgttacgatgttgtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 16
gttgaaaatagttgccaccttgtatctc-tccgttttt--ttctctactc---accttctttccccagactgtttaaatcattt----ttcaacacagGTTCTGGAGATAAATTTGGTAACTTTTCCTAATGTGGCTGATGCGGTATTAGCAAATGGGATGTTCACCCACTATGACCGGCCTCGCATTGCTCAACTTT
        |   || | | |||| |||| |||||| |      |||||||   |  |||||||     ||||||   ||| | |    | |    |||||  ||||||||||| |||| ||||| || ||||| ||||||||  |||| || ||||| ||||||| ||| |||||||| ||||| ||||| || ||||
-------gtgtgtggc-ctttgtttctcatccgttatgggcattctactctgaaaattctttctttgaactgttacgatcttgtgaattgctgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAGCTTT

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 16
gttgaaaatagttgccaccttgtatctctccgtttttttctctactcaccttctttccccagactgtttaaatcatttttcaacacagGTTCTGGAGATAAATTTGGTAACTTTTCCTAATGTGGCTGATGCGGTATTAGCAAATGGGATGTTCACCCACTATGACCGGCCTCGCATTGCTCAACTTT
        |   |     | | |    |    || ||||| ||| ||| | | |||        |   |||    | ||     |||||| ||||| || ||| |||||||||  || ||||| || |||||  ||||||||||||||||||| | ||| ||||| || || || ||||| || ||||
-------gttacttttttcctctgatgcaattttattttcactattcatcatttttttttcagttccataacatttcttgttttacagGTCCTGGAAATCAATCTGGTAACTTACCCAAATGTTGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTT

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: PP1S452_30V6.1 (Physcomitrella patens), 3'ss of exon 17
---------------------------------------------------------------------------------------------------gttgaaaatagttgccaccttgtatctctccgtttttt---tctctactcaccttctttccccagactgtttaaatcatttttcaa--cacagGTTCTGGAGATAAATTTGGTAACTTTTCCTAATGTGGCTGATGCGGTATTAGCAAATGGGATGTTCACCCACTATGACCGGCCTCGCATTGCTCAACTTT
                                                                                                     ||||  |||  |     || | |   |    ||||    |    | | ||||   || |  |   | |||| ||   | |   |  | ||||| |||||||| |||||||| || ||||| ||||||||||||||  |  | || ||||| |||||| |||| ||||| || ||||||||||||||||| |
gtgtgtgttggcttgctgcaagctacgactttgtagtactatcaggacattggaatcagttcagtatttgtcatgctagttatctccattactcctactaatgaatctaggggagtttttatgtacattatcttttaaaattcgaaatgacctaagtttctga---tatttagattgatgtcacattctcagGTACTGGAGATCAATTTGGTCACATTTCCCAATGTGGCTGATGCAATTCTGGCGAATGGCATGTTCTCCCATTATGATCGTCCTCGCATTGCTCAACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttctctactcaccttctttccccagactgtttaaatcatttttcaacacagGTTCTGGAGATAAATTTGGTAACTTTTCCTAATGTGGCTGATGCGGTATTAGCAAATGGGATGTTCACCCACTATGACCGGCCTCGCATTGCTCAACTTT
         tactcac  putative branch site (score: 1)
                                       tcatttttc  putative PPT
                                 tttaaatcatttttca  TA-rich tract