Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAAGAAAGACAACATGTACAAGGACTGTATGGAAACGGCTTCACAATCAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgatggttaaacatttacgagatgctagtgctagccattcagtttggttagttgaaaagaattggtccagacgttgaacgtagtatcccgtgtcttctgctgttatacag

Basic information

species Arabidopsis thaliana
transcript AT3G08530.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM2G091121_T01 (Zea mays), 5'ss of exon 7
ATCAAAGAAAGACAACATGTACAAGGACTGTATGGAAACGGCTTCACAATCAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgatggttaaacat-ttacgagatgcta--gtgctagcca-ttcagtttggttagttgaaaagaattggtccagacgttgaacgtagtatcc-cgtgtcttctgctgttatacag
||| |||||||||||||||||||||||||| ||||| ||    |||||||| ||||| | ||||||  ||||  |  | || |||||||||||| | ||||| || |        |   | ||    |||| ||  |   |||| | |||| |    |     | |||       | |   | ||     |||||  | | |    ||   ||| || |||
ATCGAAGAAAGACAACATGTACAAGGACTGCATGGAGACATGCTCACAATCTGGCGACCGTGAACTGTCAGAGGACTTGCTCGTGTATTTCATTAAGCAGgtttggttcgaacccattgtattggctgatgatatgggagtagctaattcaatactatatacagcaaaaggcgtatgcttgcattctgattagtaaacacatccaatcatatgtaatgcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM2G062042_T02 (Zea mays), 5'ss of exon 12
ATCAAAGAAAGACAACATGTACAAGGACTGTATGGAAACGGCTTCACAATCAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgatggttaaacat-ttacgagatgcta--gtgctagcca-ttcagtttggttagttgaaaagaattggtccagacgttgaacgtagtatcc-cgtgtcttctgctgttatacag
||| |||||||||||||||||||||||||| ||||| ||    |||||||| ||||| | ||||||  ||||  |  | || |||||||||||||| ||||| || |        |   | ||    |||| ||  |   |||| | |||| |    |     | |||       | |   | ||     |||||  | | |    ||   ||| || |||
ATCGAAGAAAGACAACATGTACAAGGACTGCATGGAGACATGCTCACAATCTGGCGACCGTGAACTATCAGAGGACTTGCTCGTGTATTTCATTGAGCAGgtttggttcgaacccattgtattggctgatgatatgggagtagctaattcaatactatatacagcaaaaggcgtatgcttgcattctgattagtaaacgcatccaatcatatgtaatgcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 12
ATCAAAGAAAGACAACATGTACAAGGACTGTATGGAAACGGCTTCACAATCAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgatggttaaacatttacgagatgctagtgctagccattcagtttggttagttgaaaagaattggtccagacgttgaacgtagtatcccgtgtcttctgctgttatacag
||| |||||||||||||||||||||||||| ||||| ||    |||||||| ||||| | ||||||  ||||  |  | || |||||||||||||| ||||| || |     |  |||   |   |   |||  || ||    |     ||        ||   |     |  | ||||    |  |       |||| |  | ||          
ATCGAAGAAAGACAACATGTACAAGGACTGCATGGAGACATGCTCACAATCTGGCGACCGTGAACTGTCAGAGGACTTTCTCGTGTATTTCATTGAGCAGgtttggt-----tcgaacccattgtattggctgatgatatgtgtcggcgtttcgagaccgaggggtccctgggccgacgagtgaaatgtcgctgcgtgccc-cagc----------

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 25
ATCAAAGAAAGACAACATGTACAAGGACTGTATGGAAACGGCTTCACAATCAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgatggttaaacat-ttacgagatgcta--gtgctagcca-ttcagtttggttagttgaaaagaattggtccagacgttgaacgtagtatcc-cgtgtcttctgctgttatacag
||| |||||||||||||||||||||||||| ||||| ||    |||||||| ||||| | ||||||  ||||  |  | || |||||||||||||| ||||| || |        |   | ||    |||| ||  |   |||| | |||| |    |     | ||| |  |  | |   | ||     |||||  | | |    ||   ||| ||  ||
ATCGAAGAAAGACAACATGTACAAGGACTGCATGGAGACATGCTCACAATCTGGCGACCGTGAACTGTCAGAGGACTTGCTCGTGTATTTCATTGAGCAGgtttggttcgaacccattgtattggctgatgatatgggagtagctaattcaatactatatacagcaaaaagcttatgcttgcattctgattagtaaacacatccaatcatatgtaatgtag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 4
ATCAAAGAAAGACAACATGTACAAGGACTGTATGGAAACGGCTTCACAATCAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatg-atggttaaacatttacgagatgcta--gtgctagccat---tcagtttggt-ta-gttgaaaagaattggtccagacgttgaacgtagtatcccg-----------tgtcttctgctgttatacag
|||||||||||| |||||||||||||| |||||||| ||    |||||||| || || | ||||||  ||||  |  | || || |||||||| || ||||| || |  |     |  |  ||    |||  ||     ||||  ||     | ||  || || |  | || |   | |||       |   | ||| || | |             ||   |  ||| | ||||
ATCAAAGAAAGATAACATGTACAAGGATTGTATGGAGACATGCTCACAATCTGGTGACCGTGAACTGTCAGAGGACTTGCTTGTCTATTTCATCGAGCAGgtttggttcaaacccattcccttgactgatattacgagactagtgataagctaattcagtatacgccgtaaggtcctagtctgtctacttggcatagcattctgattagcaaacacatccaatcatgtaacacag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 4
ATCAAAGAAAGACAACATGTACAAGGACTGTATGGAAACGGCTTCACAATCAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgatggttaaacatttacgagatgctagtgctagccattcagtttggttagttgaaaagaattggtccagacgttgaacgtagtatcccg-----------tgtcttctgctgttatacag
|||||||||||| |||||||||||||| |||||||| ||    |||||||| || || | ||||||  ||||  |  | || |||||||| || || ||||| || |        |   | ||     || || |   || |   |  |  | | | |   || |   | |||       |   | | | || | |             ||   |  ||| | ||||
ATCAAAGAAAGATAACATGTACAAGGATTGTATGGAGACATGCTCACAATCTGGTGACCGTGAACTGTCAGAGGACTTGCTTGTGTATTTTATCGAGCAGgtttggttgaaacccat--tctattgactgataatatgagactagcgataagctaattcataaggtcctagtctgtctacttggcattgcattctgattagcaaatccatccattcatgtaacacag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 11
ATCAAAGAAAGACAACATGTACAAGGACTGTATGGAAACGGCTTCACAATCAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgatggttaaacat-ttacgagatgcta--gtgctagcca-ttcagtttggttagttgaaaagaattggtccagacgttgaacgtagtatcc-cgtgtcttctgctgttatacag
||| |||||||||||||||||||||||||| ||||| ||    |||||||| ||||| | ||||||  ||||  |  | || ||||||||||||||  |||| || |        |   | ||    |||| ||  |   |||| | |||| |    |     | |||       | |   | ||     |||||  | | |    ||   ||| || |||
ATCGAAGAAAGACAACATGTACAAGGACTGCATGGAGACATGCTCACAATCTGGCGACCGTGAACTGTCAGAGGACTTGCTCGTGTATTTCATTGAGAAGgtttggttcgaacccattgtattggctgatgatatgggagtagctaattcaatactatatacagcaaaaggcgtatgcttgcattctgattagtaaacgcatccaatcatatgtaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829444|gb|CK119128.1|CK119128
EST:     CAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAG                         GGCAAAAAGGAATGCTTTGCTACATGTCTCTTTGTATGTTATGACTTAATC
genomic: CAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgat ... tgttatacagGGCAAAAAGGAATGCTTTGCTACATGTCTCTTTGTATGTTATGACTTAATC
EST: gi|116468291|gb|EG510883.1|EG510883
EST:     CAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAG                         GGCAAAAAGGAATGCTTTGCTACATGTCTCTTTGTATGTTATGACTTAATC
genomic: CAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgat ... tgttatacagGGCAAAAAGGAATGCTTTGCTACATGTCTCTTTGTATGTTATGACTTAATC
EST: gi|47828467|gb|CK118151.1|CK118151
EST:     CAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAG                         GGCAAAAAGGAATGCTTTGCTACATGTCTCTTTGTATGTTATGACTTAATC
genomic: CAGGCGAACATGAACTTGCAGAACAACTACTGGTGTATTTCATTGAACAGgtatgatgat ... tgttatacagGGCAAAAAGGAATGCTTTGCTACATGTCTCTTTGTATGTTATGACTTAATC