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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAGgttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaagaatctttttcccaccgtattaatatcaatagtcttttaatttttatttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G08530.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 14
GTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAGgttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaaga-atctttttcccaccgtattaatatcaatagtcttttaatttttatttgcag
||||||||||||||||| ||||| || ||||||||||| || ||||| ||||||||||||||  | | |   |        | | | |||  |  | |  | ||||    ||  ||    | | ||| ||     | |   |     |  |       ||  |   ||  ||| | |   |  | ||  | || ||    | ||    ||  ||  || |    |    ||   |||| ||||| ||||||||
GTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAGgtgtgagagaaacctctgcagttcatacaattttttta--tttgaac---ctgaaccatttctttgtagct----ccccttattgtctgcgtccttgttatatctgtgg-taact-gtttttgttttgaacagtatatgtacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 14
GTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAGgttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaagaatctttttcccaccgtattaatatcaatagtcttttaatttttatttgcag
||||||||||||||||| ||||| || ||||||||||| || ||||| |||||||| |||||  ||| |    ||   ||    ||  |  ||| |||  | |        ||   ||||                 ||| |  | || |   |       ||| ||      | || |    ||||||||    |||  |    | | |  || ||     || ||      |||| ||||| ||||||||
GTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCGCAGgt--gtgagagaaacctctgcagtttatattata-taattttt--------ttagttgaac----------------ctgaaccatttctttgtagctccccttattc-----tctgtctccttgttatatctgttgacaa--tgtctgctgacagt-----tacca------ttttcattttgatttgcag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 14
GTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAGgttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggact-ttactgaatata-tgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatat-agaatgaagaatctttttcccaccgtattaatatcaatag-----tcttttaatttttatttgcag
||||||||||||||||| || || || ||| ||||||| || ||||| ||||||||||||||  | | |   |     |  | | |   |  || |    | |       |  ||       | | ||| |  |||    |     | ||||  ||   || || ||   |||  | | ||   || | || | |   || ||||  |  |         |   |  |||| |      | |||| |||||  |||  ||
GTTGGGTACACACCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGgtatgagagaatcctctgtagttcatattaactatttctttgtatttctcccattgtctgccacactgttggataattgattatcaaattatatattttctgacatgg-aaattctataact--atttcatctcaatttgcagaaattaatagttgtaaaaactaattcaacaactttcttttttcattttggtttctag

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 14
GTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAGgttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaagaatctttttcccaccgtattaatatcaatagtcttttaatttttatttgcag
||||||||||| ||||| || || || ||| ||||||| || ||||| ||||||||||||||  | | |   |     || | | |   |  || |    |||      | ||  |  | | |  |   |        ||||  | | || | |||| | |  | ||                                                                                     
GTTGGGTACACGCCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGgtatgagagaatcctctgtggttcatattaactatttctttat------atttctcccattgtccgccacac---tgttggataactgatta-tcaaattatatattttc----------------------------------------------------------------------------------

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 14
GTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAGgttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaagaatctttttcccaccgtattaatatcaatagtcttttaatttttatttgcag
|||||||| || ||||||||  |||| |||||||||||||| || ||  |||||||||||||  |    |     |  |  |  |||||   |       |||||||    |  |   |  ||     || |||       |   | ||  | |   || |   || ||   ||||    |   |||  |                                                              
GTTGGGTATACTCCTGATTATTTGTTCCTTCTGCAAACCATTCTTCGATCAGATCCTCAGgtatgca-agcctttttctagtgtttgcagattttccttttatgaaattgttccagaaaggat---cagcttaaatttcaaattggataaaattttcctga---gtggaggcatttatttttgggttgcag-------------------------------------------------------------