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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcaatatattctgtatgcaccaatatttgtagctcattacttgttctactcctatatacagaattgtatacagtagatgtaaattatcatgtgcttatttgtctatttgtgcatattcagAGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAG

Basic information

species Arabidopsis thaliana
transcript AT3G08530.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 15
gtaggtcaatatattctgtatgcaccaatatttgtagctcattacttgttctactcctatatacagaattgtatacagtagatgtaaattatcatgtgcttatttgtctatttgtgcatattcagAGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAG
         |||  | |  || ||     ||   ||| ||  ||  |  |    |    | |  |  ||   || |||| |        | || ||   |    || | |||| |  |    ||||||||  |||| ||||| || ||  ||||||| ||||||||  |||||||||| || || |||||||||||||| ||||| |||
--------gtatccttttaattcatttcaatgcatag-tcggtatgtaatacctttgcttttttaccatgaaattcagttg--------tgtcttgccttaccatgcccattttttaa----cagAGAAACATGATACGTGAGGCAACAGCTTTCCTGCTGGATGTTTTAAAGCCAAACTTGCCGGAGCATGCTTTTCTTCAAACCAAG

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 15
gtaggtcaatatattctgtatgcaccaatatttgtagctcattacttgttctactcctatatacagaattgtatacagtagatgt-aaattatca--tgtgcttatttgtctatttgtgcata-ttcagAGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAG
                     |   ||   ||  |||  | | |   ||  |   | |   | || | ||| |      |||||  |||||| ||  |  |||||  | | ||||  || ||  ||||||| ||  |||| |||||||| ||  | ||  |  | |||||  | |||||||||||||||||||||| ||| |||||||| |||
---------------------gtgacatgcttcataggac-tgaacagtattgggcatcgttgca-atttgca------agatgccaaattaccaattaagcttaagtctttattattgtattcttcagAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatacagtagatgtaaattatcatgtgcttatttgtctatttgtgcatattcagAGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAG
        tagatgtaaattat  TA-rich tract