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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctgtgttacttgaattttacattctgaattacttttttgagatgcttgatttggttgttgtccctcattataaaacctatgaaaacacaatga...

Basic information

species Glycine max
transcript GLYMA12G08720.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os02g02750.1 (Oryza sativa), 5'ss of exon 14
GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctgtgttacttgaatt------ttacattctgaattacttttttgagatgct------tgatttggttgttgtccctcattataaaacctatgaaaacacaatga--
|| || |||||| |||| |||||||||||||| || || |||||||| || ||||||||||||||    ||    | || |   ||      ||   || |  |  || ||||  |  |  |      ||||  |  | |  |   | || || |||| |       | |  ||   
GGCAGAATGATTCTGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATGgttgttgcctaatcacctttgttctttggttttgttttccaccaccttttataagtaatatatgatgatacgcatatattttgttatgattaaacattgtgcctccctttgcag

upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os06g10280.1 (Oryza sativa), 5'ss of exon 14
GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctgtgttacttgaattttacattctgaat-tacttttttgagatgcttgatttggttg-ttgtccctcattataaaacctatgaaaacacaatga
|| ||||||||  | || || |||||||||||||| || ||||| |||||||| |||||||||||||   |  |  | | | | ||  |  |  ||  | ||  |       | |  |   |  ||   |||      | ||  |||  | |   |   ||    
GGAAGGATGATACTTGCTCATTTATGTGATGAACCCAAAGGTCTCAAAACTGGAATGTGCATGgtatgt-ccatactccat-agttccatgtcttgtttctatctgcacatcacgtgtacatgagtcacttgaagtaaaataccaaatatctcttatttcag---

upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctgtgttacttgaattttacattctgaattacttttttgagatgcttgatttggttgttgtccctcattataaaacctatgaaaacacaatga
|| || |||||| |||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||   |||  |  |    |||    ||||||   ||  |||||  |    | | ||||  |     | |   |  ||   |  |||      |||    
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaat----cattctttgttcttttttacaccgtcctcattta-tgaccttactaaaaaatcgtatttatccttctacag---

upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G466281_T03 (Zea mays), 5'ss of exon 1
-------------------------------------GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctgtgttacttgaattttacattctgaattacttttttgagatgcttgatttggttgttgtccctcattataaaacctatgaaaacacaatga
                                     || || |||||| |||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||   |||  |  |    |||    ||||||   ||  |||||  |    | | ||||  |     | |   |  ||   |  |||      |||    
TGAACATTACTTTACATCTGCTTATATTGCTCCACAGGGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaat----cattctttgttcttttttacaccgtcctcattta-tgaccttactaaaaaatcgtatttatccttctacag---

upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv01s0010g00950.t01 (Vitis vinifera), 5'ss of exon 15
GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctgtgttacttgaattttacattctgaattacttttttgagatgcttgatttggttgttgtccctcattataaaacctatgaaaacacaatga-------
|| ||||||||| |||||||||| ||||||||||| |||||  |||||||||| |||||||||||||     ||  || |  ||    ||| |   | | | || | ||  |   | |  |   |  ||  |||||  | |    || |      | |            
GGAAGGATGATTCTGGCACACTTGTGTGATGAACCCAAGGGCTTGAAAACTGGAATGTGCATGgtat-----gttgtattctaaccagacaatt--attgagttatctgccactgtggtctctctcttttcccctccctctggcccccacacgcgccccccccctttccc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814309|gb|BQ298787.1|BQ298787
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|57574463|gb|CX547438.1|CX547438
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|22932418|gb|BU549557.1|BU549557
EST:     CTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: CTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|20814308|gb|BQ298786.1|BQ298786
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|13563545|gb|BG551765.1|BG551765
EST:     CTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: CTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|58016371|gb|CX703113.1|CX703113
EST:     TGGCACAATTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|58021674|gb|CX708415.1|CX708415
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|14991068|gb|BI316741.1|BI316741
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|58022824|gb|CX709565.1|CX709565
EST:     TGGCACACTTATGTGATGAACNTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
EST: gi|58023371|gb|CX710112.1|CX710112
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctg ... tattttacagTCCCTCATGTTTCTCCCATTGGCCATTGCCAATGTACTTGCATCCAGGCTA