1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...aaaatgcttgtacggttattgaatcttatattgcctcttgcttccttttgcatatatctccatatattatgatttcttatgtgggaagcttaatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG
species | Glycine max |
transcript | GLYMA12G08720.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTNCTGA-ATCTTGTG GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTEST: gi|57574463|gb|CX547438.1|CX547438
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTEST: gi|20814308|gb|BQ298786.1|BQ298786
genomic: CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTEST: gi|58016371|gb|CX703113.1|CX703113
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: CACATCTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG GGGAGGATGATTTTGGCACAATTATGTGATGAACCTAAGGGTCTGAAAACTEST: gi|58021674|gb|CX708415.1|CX708415
genomic: CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTEST: gi|14991068|gb|BI316741.1|BI316741
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTEST: gi|58022824|gb|CX709565.1|CX709565
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG GGGAGGATGATTTTGGCACACTTATGTGATGAACNTAAGGGTCTGAAAACTEST: gi|207781927|gb|GD751860.1|GD751860
genomic: CACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
EST: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGEST: gi|58023371|gb|CX710112.1|CX710112
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGG
EST: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTG GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
genomic: ATCCACATTTAGTTGTTATAGGAACAGGACTTACTTTCGGATATCTTGTGgtaagatagt ... taatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACT
ttttgcatatatctccatatattatgatttcttatgtgggaagcttaatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG
gcttaat putative branch site (score: 4)
atatattatgatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatgcttgtacggttattgaatcttatattgcctcttgcttccttttgcatatatctccatatattatgatttcttatgtgggaagcttaatttgcagGGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG
- - tgcttgt
- - - - - - - - - - - - - - - -tgcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggga