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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaataagatctatagtataacctcttctattatttttaccctaaagttctgttgtctcatgaattaccattgtttcatattgtgacttcagGTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G08530.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 13
--------------------------------------------------------------------gtaagcaataagatctata-gtataacctcttctattatttttaccctaaagttctgttgt-----ctcatgaattaccattgtttcatat---tgtgacttcagGTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAG
                                                                    |||    ||    ||||   ||||||       |     | || | ||    || |  |||      |      | | |||||| | |  |   |||  ||  ||||||||||||||||||| ||||| || ||||||||||| || ||||| ||||||||||||
gtgcctgtttacttatcaaagaatattgaagcttaatccatagaataattttaatgctattatggcatgtatagcattttgtctacctgtataattatcattgcatgtattgcactttcattttactgtaaacatttggtcctgaacattgtattacttatttgttgctatagGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCTCAG

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 13
-------------------------------------------------------------------gta-agcaataagatctatagtataacctcttctattatttttaccctaaagttctgttgt-----ctcatgaattaccattgtttcat---attgtgacttcagGTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAG
                                                                   | | |||| |  |       ||||||       |     | || ||||    || |  |||      |      | | |||||| | |     ||||  ||  ||||||||||||||||||| ||||| || ||||||||||| || ||||| |||||||| |||
gtgcctgcttacttatcaaagaatattgaagtttaatccatagaataatttagtgctattatggcatgcatagcattttgtcaccctgtataattataattgcatgtattgccctttcattttactgtaaacgtttggtcctgaacattgtattacttatttgttgctatagGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCGCAG

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 13
gtaagcaataa--gatctatagtataacctct---tctattatttttaccctaaagttctgttg-tctcatgaattaccattgtttcatattgtgacttcagGTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAG
    |   |||  |  || || ||| | |  |   | ||||   ||| |  |  | |        |       ||     |  || | | || ||  | |||||||||||||||||||| || || || ||| ||||||| || ||||| ||||||||||||
-ggggttttaattggcctgtattattaacattgcatatattgcctttgcattttactggaacgaattgtgctgatctttttcattactttttttgg-tacagGTTGGGTACACACCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAG

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 13
---------------------------------------------------------------------------------------gtaagcaataagatctata--------gtataacctcttctattatttttaccctaaagttctgttgtc-----tcatgaattaccattgt--ttcatattgtgacttcagGTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAG
                                                                                        | | | |||     | ||        ||||||       |     | || || |    || |  ||       |  ||  | | |||| |  ||  | ||    || |||||||||||||| ||||| || || || ||| ||||||| || ||||| ||||||||||||
gtagaagcttgtttatgtatcaaataatactgatttttgttcatctgattcttttgtgcttctcttgttaaattctttaatattgttatgacctatagaggttttaattggcctgtataattaacattgcatatcttgcctttgcattttactggaacaaattgtggctgatcattttcattactttttccgctacagGTTGGGTACACGCCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAG

upper sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 13
----------------------------------------------------------gtaagcaataagatctatagtataacctcttctattatttttaccc-taaagttctgttgtc---tcatgaa---tta---ccattgtttcatatt-gtgacttcagGTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAG
                                                           |   |  ||| || | |    || |   | ||| | |||||| |  |||  || | || |    | |||     |||     | ||| |  | || ||  ||  |||||||||| || ||||||||  |||| |||||||||||||| || ||  |||||||||||
gtgaatagcatgatctaggttttcgttgcctcttaaacaaaatatatgttttttttctttttcctgtaaaatttgtttcttatctgttactactttttttatcagtaatattttattattgaattatgggcatttagagtaactgtgttttcttcgtcgctgtagGTTGGGTATACTCCTGATTATTTGTTCCTTCTGCAAACCATTCTTCGATCAGATCCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccctaaagttctgttgtctcatgaattaccattgtttcatattgtgacttcagGTTGGGTACACACCTGATTACCTGTTTCTTCTGCAAACCATACTCCGTACAGATCCTCAG
  ccctaaa  putative branch site (score: 3)
                                    tttcatatt  TA-rich tract