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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgagccttattctgtattatttgaaacatctacattttcctttttgaaatgatgtttctctgcttgccttattttgtgttatttgaaacatttaccttt...

Basic information

species Zea mays
transcript GRMZM2G096470_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g61860.1 (Oryza sativa), 5'ss of exon 9
TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgagccttattctgtattatttgaaacatctacatttt---cctttttgaaatgatgtttctctgcttgccttattttgtgttatttgaaacatttaccttt
||||||| || |||||||| || || |||||||||||||| ||||| |||||||| |||||||| || ||||||||||| || |||||||||||| || |||||| |   |||||||||| |   |  |        ||||      || ||  |   |    || |   |  | |   |||    ||  | |   
TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgtaagtcttatttttctttatttgaaagagtaatttcggaaaggttttatggtcgaagt--cgtagaaaaccatgggtattttggcttgtggtatacatccc-

upper sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgag-ccttattctgtattatttgaaacatctacattttcctt--tttgaaatgatgtttctctgcttgccttattt-tgtgttatttgaaacatttaccttt---------------------------
  |||||||| ||||| || || || || || |||||||| ||||| ||||||||||| || |||||| ||||||||||||| |||||||||||| ||   ||||  | |||   || |    | ||   |   |||  ||   || | ||    | ||        |||| |  | ||||        || | | |                           
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag

upper sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 9
TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgag-ccttattctgtattatttgaa----acatctacattttcctttttgaaatgatgtttctctgcttgcc--ttattttgtgttatttgaaacatttaccttt------------------------
  |||||||| ||||| || || || || || |||||||| ||||| ||||||||||| || |||||| ||||||||||||| |||||||||||| ||   ||||  | |||   ||||       | ||   | || |||    || |      | ||   |   |  || |    | || || ||      | |   |                        
CCAATCATCTGGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctattgagtagcgtagcttagtattgcttcacaaagttgccaatgtcaaatgagcatttgtacactattgttcgagcttccttctgatctattgtaattatttggacttcag

upper sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgagcctt-----att----------ctgtattatttgaaaca----tctacattttcctttttgaaatgatgtttc-------tctgcttgccttattttgtgttatttgaaac-----atttaccttt-----------------------------
|  ||||||| ||||| ||||| || ||||| || ||||| || || |||||||| || || || || ||||| |||||||| |||||||||||| ||  ||     |||          |||| || ||||||| |    |    |  |      ||    ||    |         | || |   |||  | | ||  |||||  ||     |   |  ||                              
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatagaattgagtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag

upper sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgagcctt-attctgtattatttgaaacatctacatt-ttcctttttgaaatgatgtttc---tctgcttgccttattttgtgttat--ttgaaacatttaccttt-------------------------------------------------------------------------------
| ||||| || ||||  || || || || || |||||||| ||||| || ||||| || || ||||||||||| |||||||| |||||||||||| || ||  ||  ||  |||| |  ||  |  |  || ||        | ||    |||    |||  ||   ||  ||||  ||||        || | | |||                                                                                
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag