1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gtgggccggatgagtttcagcaaaaccgaatcacttgtggcttacccgcaagcaacgactacatttctgactctgactggtgcattgggtggtggtacagAGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAGTATGCGAACATCTATAAG
species | Zea mays |
transcript | GRMZM2G096470_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCG AGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAEST: gi|78111977|gb|DV530373.1|DV530373
genomic: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCGgttcgttccc ... ggtggtacagAGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGA
EST: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCG AGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAEST: gi|50325263|gb|CO520389.1|CO520389
genomic: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCGgttcgttccc ... ggtggtacagAGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGA
EST: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCG AGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAEST: gi|76936603|gb|DV174795.1|DV174795
genomic: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCGgttcgttccc ... ggtggtacagAGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGA
EST: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCG AGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAEST: gi|76287464|gb|DV027032.1|DV027032
genomic: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCGgttcgttccc ... ggtggtacagAGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGA
EST: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCG AGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAEST: gi|88757608|gb|DY541749.1|DY541749
genomic: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCGgttcgttccc ... ggtggtacagAGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGA
EST: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCG AGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGA
genomic: CGGGAGATGAAGGCCAAGGCCCTCCCTTTCATCGCCTTCGAGCACAAGCGgttcgttccc ... ggtggtacagAGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGA
ccgcaagcaacgactacatttctgactctgactggtgcattgggtggtggtacagAGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAGTATGCGAACATCTATAAG
tacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggccggatgagtttcagcaaaaccgaatcacttgtggcttacccgcaagcaacgactacatttctgactctgactggtgcattgggtggtggtacagAGACGCCTATGGCTTCGCCGTGCGGCCACAACACCTGCAGCGGTACAGAGAGTATGCGAACATCTATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG