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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggggtccctccttttcttattaatgccaaactgcccgagtatcttagaagttacattctggatagaggcttctgaccactataaattgcagGTCCTGCACTTGTGACAACAAAAGATGCTGGGGATGCAGTAACCCTTTTGCAGTCTTTAGCTGGTTCCACTTTTGACAGTAGCCAGCTTGTTTTAACAGC

Basic information

species Zea mays
transcript GRMZM2G096470_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 3'ss of exon 10
------------------gtaatggggtccctccttttcttattaatgccaaactgcccgagta-tcttagaagttacatt-----ctggatagaggcttctgaccactataaattgcagGTCCTGCACTTGTGACAACAAAAGATGCTGGGGATGCAGTAACCCTTTTGCAGTCTTTAGCTGGTTCCACTTTTGACAGTAGCCAGCTTGTTTTAACAGC
                  | | |   ||| |||      || | ||    |||  |   |  || ||| || |  || |||     ||| ||  |  |||   ||   | |   || |||||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||| ||
gtactgggtcgatcttttgcatttttgtcgctcaaacaattgt-aacaaaaaaaagtttgtataatctcaggatatatattggtcactgcatgaatacttaccactggtgttggttacagGTCCTGCGCTTGTGACAACAAAGGATGCTGGGGATGCTGTGACCCTTTTACAGTCTTTGGCTGGTTCTACTTTTGACAGCAGCCAACTTGTTTTAACTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtatcttagaagttacattctggatagaggcttctgaccactataaattgcagGTCCTGCACTTGTGACAACAAAAGATGCTGGGGATGCAGTAACCCTTTTGCAGTCTTTAGCTGGTTCCACTTTTGACAGTAGCCAGCTTGTTTTAACAGC
                                 ttctgac  putative branch site (score: 2)
                                         actataaatt  TA-rich tract