Sequence
atgc intronic sequence ATGC exonic sequence...agtatgcttggactaatattctgtttcttgagtagactataagctattatcttctctagaaacattcttagcattttactgctatttttaaacatttcagTGCTTCGTGTGTGGGATGTTCTTCTCTTTGAGGGAAACCGTGTGATGCTGTTCCGGACAGCTCTTGCACTGATGGAGTTGTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g61860.1 (Oryza sativa), 3'ss of exon 9
agtatgcttggactaatattctgtttc-ttgagtagactata-agctattatcttctctagaaacattcttagcattttactgctatttttaaacatttcagTGCTTCGTGTGTGGGATGTTCTTCTCTTTGAGGGAAACCGTGTGATGCTGTTCCGGACAGCTCTTGCACTGATGGAGTTGTATG
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gttacaatctctttttttttgtacttgatctaataatatatctagctattatattatctcgaaatatgcttaatacttaattgctattt--gaacatttcagTCCTTCGAGTTTGGGATGTGCTTCTGTTTGATGGAAATCGCGTGATGCTCTTTCGAACAGCTCTTGCCCTAATGGAGTTGTATG
upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA20G38810.1 (Glycine max), 3'ss of exon 9
-------------------------agtatgcttggactaatattctgtttc----ttg--agtagactataagctattatcttctctaga--aacattcttagcattttactgctatttttaaacatttcagTGCTTCGTGTGTGGGATGTTCTTCTCTTTGAGGGAAACCGTGTGATGCTGTTCCGGACAGCTCTTGCACTGATGGAGTTGTATG
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gtcaggttttatgttctatctattgagta-gcgtagcttagtattgcttcacaaagttgccaatgtcaaatgagcatttgtacactattgttcgagcttccttctgatctattgtaattatttgg-acttcagTTCTTCGAGTGTGGGATGTGCTTCTTTTTGAAGGAAACCGAGTCATGCTCTTTAGAACTGCAGTTGCTTTAATGGAGCTATATG
upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 9
----------------------------agtat-gcttggactaatattct---gtttcttgagtagactataagctattatcttctctagaaacattcttagcattttactgctatttttaaacatttcagTGCTTCGTGTGTGGGATGTTCTTCTCTTTGAGGGAAACCGTGTGATGCTGTTCCGGACAGCTCTTGCACTGATGGAGTTGTATG
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gtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttgg-acttcagTTCTTCGAGTGTGGGATGTGCTTCTTTTTGAAGGAAACCGAGTCATGCTCTTTAGAACTGCAGTTGCTTTAATGGAGCTATATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attatcttctctagaaacattcttagcattttactgctatttttaaacatttcagTGCTTCGTGTGTGGGATGTTCTTCTCTTTGAGGGAAACCGTGTGATGCTGTTCCGGACAGCTCTTGCACTGATGGAGTTGTATG
tatttttaaacatttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtatgcttggactaatattctgtttcttgagtagactataagctattatcttctctagaaacattcttagcattttactgctatttttaaacatttcagTGCTTCGTGTGTGGGATGTTCTTCTCTTTGAGGGAAACCGTGTGATGCTGTTCCGGACAGCTCTTGCACTGATGGAGTTGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA