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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACTGCCAGgtatatttctaccttagtgcttattgctattacttttcttgtcgaatgaatgtcattagcttgttacgaagcccttataagttttcaggtctggtctcat...

Basic information

species Zea mays
transcript GRMZM2G096470_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096470_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
ATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACTGCCAGgtatatttctaccttagtgcttattgctattacttttcttgtcgaatgaatgtcattagcttgttacgaagcccttataagttttcaggtctggtctcat--
 || ||||| || || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||  |||| || ||| ||||||||||||| |||||||   | | ||||| | || | |  | | ||||||||||||    || ||   | ||||| ||  | |  ||||  |  ||  || | |   |||  |  
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtatggctttcccttacttctgactcatgtcacttttcttgtcactggattgatgt-agcttctttgggaaaccttgcatattg-caagaccaatctgttgc

upper sequence: GRMZM2G096470_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
ATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACTGCCAGgtatatttctaccttagtgcttattgctattacttttcttgtcgaatgaatgtcattagcttgttacgaagcccttataagttt-tcaggtctggtctcat
|||||| || || |||||  | || |||||||| |||||||| || || || || || || || ||||||||||| || ||  |||||||||||||||||||   |   |   | |    |||    |  || |||||    |   |   | | |      | ||    |    || | |||   ||   |  ||| |   
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccaacttttttttataaaagctgttttttccattatttttcagtcaatctaatgaggtgttt-

upper sequence: GRMZM2G096470_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
ATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACTGCCAGgtatatttctaccttagtgcttattgctattacttttcttgtcgaatgaatgtcattagct-tgttacgaagcccttataagtt--ttcaggtctggtctcat
|||||| || || ||||| || || |||||||| |||||||| || || || || || || || ||||||||||| || ||  |||||||||||||||||||   |   |   | |    |||    |  || |||||   |    |  ||   |  |||| | ||    |    || | |||   |  |  |  ||| |   
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccattttttttattataaaagctgttttttccattatttttcagtcaatctaaatgaggtgt---

upper sequence: GRMZM2G096470_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 5
ATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACTGCCAGgtatatttctaccttagtgcttat-tgct--attacttttcttgtcgaatgaatgtcattagcttgttacgaagcccttataagttttcaggtctggtctcat-
||| ||||| || ||||| |||||||||||||| |||||||| || ||||| || || || || |||||||||||||| ||  | || || ||||| ||||||  |   |      | | |||| || |  |||  |||| | || | |  |||    |||  || || | ||     | | |   | ||    || | |  | 
ATTCCCAGGTCATCCTGCTCTAGATGAGGATGGTAGAAATGCTTTGAGGCGTTTACTTACGGCATATGCTCGACACAACCCCTCTGTAGGGTACTGTCAGgtaattggattggaaggagtttatgtggttaattgtttttatggttgga-aaatagagttactttcttgcaaaatttgtgtca---tgcataattgatatagta