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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatcattttattttttaaccgggttctgtattcatttgttgatgccatttcttactttggaacttttagGATTTGCCTAGAACATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAG

Basic information

species Zea mays
transcript GRMZM2G096470_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 3'ss of exon 3
-----------------------------------------gtatatatcatttt-attttttaaccgggttctgtattcatttgttgatg---ccatttcttactttggaac--ttttagGATTTGCCTAGAACATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAG
                                          |  ||   ||  | |||||   |     ||  | | || |  | | |       || | || ||||||     |||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||  |||| || ||| |||
gtagatggataatttaattgttattattggaatttaactctctccatgctatggtgattttactaatatatttgggagtcctgcgctaagaggttaatctgttgctttgggttctttttagGATTTGCCTAGAACGTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAG

upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------------------------------------gtatatatcattttattttttaaccgggttctgtattca---tttgttgatgccatttcttactttggaacttttagGATTTGCCTAGAACATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAG
                                                                           | || |||  | ||| ||  ||     |||  || ||   |||  ||||   |      |  ||   |  |  ||||||||||| ||||||| ||||| || ||||| |||||||||||||| |||||||| || ||||| || || || || |||||||||||||| ||  | |
gtcattacatgcatatgctttgaaatttagtactcaatttctttgattttcaggtgttgcctttgttaaatccaaaaatctcaagtcattgtt--actaatctctaaatgcaggatttactgatcaaaaaaaaaaaatttctaaatgcagGATTTGCCTCGAACATTCCCAGGTCATCCTGCTCTAGATGAGGATGGTAGAAATGCTTTGAGGCGTTTACTTACGGCATATGCTCGACACAACCCCTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaccgggttctgtattcatttgttgatgccatttcttactttggaacttttagGATTTGCCTAGAACATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAG
                                  ttcttac  putative branch site (score: 2)
                                                ctttt  putative PPT
              tattcattt  TA-rich tract