Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgacttattccattatttgtaccacatgattgtcagacatattaacagcacaagattgacaagaacactcatgtattttccagTAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTG

Basic information

species Zea mays
transcript GRMZM2G096470_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g61860.1 (Oryza sativa), 3'ss of exon 8
-----------gtgtgtgact-tattccattatttgtaccacatga-ttgtcagacatattaacagcacaagattgac-aagaacactcatg-tattttccagTAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTG
            |   ||  | ||||  | ||| ||||   ||||| ||| || | || ||||| | ||||  ||||| |     |  |||| | |||| |||||||||| || |||||||| || || |||||||||||||| ||||| |||||||| |||||||| || ||||||||||| || ||||||||||
gtttgcgcattattcttgtttgtattaaaatatctgtatatcatgacttggcatatatgttaaccg-acaattttgactacttttatgcatggttttttgcagTAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTG

upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 8
-----------------------gtgtgtgacttattccattatttgtaccacatgattgtcagacatattaacagcacaagattgacaagaacactcatgtattttccagTAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTG
                        | ||| | | |  |||  |  || |     |   |    | || |||     |     |||  |  |     |||  | |||| |||  |||||||| ||||| || || || || || |||||||| ||||| ||||||||||| || |||||| ||||||||||||| ||||||||||
gtttgtaaactattttaattcatttttgtcattgaacccaccaactgaaatttgtttctagt-gtcacatttcttacttgttattttcttg--tgttcactttttttgcagCCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTG

upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA20G38810.1 (Glycine max), 3'ss of exon 8
gtgtgtgacttattcca--ttatttgtaccacatgattgtcaga------catattaacagcacaagattgac------------aagaacactcatgtattttccagTAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTG
|| ||| |  ||||  |  | |||| |  |     | |  || |        | ||   ||||    |||               ||        |  |||||| |||  |||||||| ||||| || || || || || |||||||| ||||| ||||||||||| || |||||| ||||||||||||| ||||||||||
gtttgtaaactattttaattcatttttgtctttgaactcacaaagtgaattttgtttctagcattccatttcttatttgttatttaattgtgtatacttattttgcagCCAATCATCTGGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTG

upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 8
------------gtgtgtgacttatt-ccattatttgtaccacatgattgtcagacatattaacagcacaagattgacaaga---------acactcatgtattttccagTAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTG
             ||  |   |||||  | ||     |  |  || ||| |      | |  |     ||   | ||              ||  |  |||  | | |||| ||||| || ||||  || || || || || |||||||| ||||| || ||||| || || ||||||||||| |||||||| ||||||||||
gtttgtttcttgttgcatattttattatcgttgcccttttccaattattattttttctttatatgaggcattttggatggcttcttatttcacctttgtgtcatgtgcagTTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtcagacatattaacagcacaagattgacaagaacactcatgtattttccagTAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTG
                                             tattttcc  CT-rich tract
        acatattaa  TA-rich tract