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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATAAGAACCAAGAAGCCAATTGTAGTAATGTGGATGATATGTATCATGGCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAGgtatccttctcaatatgctaatttttcattcatttccaaatcataagtcagtagtttcattaaactaaggggcaaactaaataaaataaggaaatataat...

Basic information

species Zea mays
transcript GRMZM2G096470_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 11
CGATAAGAACCAAGAAGCCAATTGTAGTAATGTGGATGATATGTATCATGGCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAGgtatccttctcaatatgctaatttttcattcatttccaaa-tcataagtcagtagtttcattaaact--aaggggcaaactaaataaaataaggaaatata-at
   | |      |||| | | || | | | |   ||||| ||||||  |||||| ||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||| ||   ||   ||| ||||   | ||| | || | | | | ||||||  ||| |  |   | ||||||||||||   ||  |    |  ||
AAGTGACTTGACAGAAACTAGTTCTGGAAGTACAGATGACATGTATAGTGGCCTGACTGTCAACACTGAGATTGATTCTTTGCCTGATCCAAAAGACCAGgtatccttctcaaaat---aacacttctttcacccctaaaattatcaatta-tggtttcaaaaaaattcagcagacaaactaaataagtcaaaaagtcgtgtat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32943643|gb|CF048462.1|CF048462
EST:     GCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAG                         GTAGTCTGGCTGAAGGGTGAGCTGTGCCAACTGCTAGAGGAGAGAAGATCC
genomic: GCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAGgtatccttct ... gtattctcagGTAGTCTGGCTGAAGGGTGAGCTGTGCCAACTGCTAGAGGAGAGAAGATCC
EST: gi|67021387|gb|CO450136.1|CO450136
EST:     GCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAG                         GTAGTCTGGCTGAAGGGTGAGCTGTGCCAACTGCTAGAGGAGAGAAGATCC
genomic: GCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAGgtatccttct ... gtattctcagGTAGTCTGGCTGAAGGGTGAGCTGTGCCAACTGCTAGAGGAGAGAAGATCC
EST: gi|211105491|gb|FL194154.1|FL194154
EST:     GCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAG                         GTAGTCTGGCTGAAGGGTGAGCTGTGCCAACTGCTAGAGGAGAGAAGATCC
genomic: GCCTCACTGTCAACTCTGAGATTGATTCTCTGCCTGATCCTAAAGACCAGgtatccttct ... gtattctcagGTAGTCTGGCTGAAGGGTGAGCTGTGCCAACTGCTAGAGGAGAGAAGATCC