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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacctgcatatttattttttgaacgtaacagcctgcatttttcgaacatgtaatttatcaactgttctattaaagagcaaatccttttgatatgtggtggcagCTGTGGCAAGCTTTTATTGGTATTGGAGCTCGTCGGGTCGAAGGGTACTATGAGGGCCTCCTTGCAGCGGACAGTGAAAGTCAAGACAACAAATATCCGG

Basic information

species Zea mays
transcript GRMZM2G096470_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096470_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 3'ss of exon 2
gtacaacctgcatatttattttttgaacgtaacagcctgcatttttcgaacatgtaatttatcaactgttctattaaagagcaaatccttttgatatgtggtggcagCTGTGGCAAGCTTTTATTGGTATTGGAGCTCGTCGGGTCGAAGGGTACTATGAGGGCCTCCTTGCAGCGGACAGTGAAAGTCAAGACAACAAATATCCGG
                        | || |      || ||| ||       | ||  || |    | ||  ||||||        || | |    | ||||| ||||| |||||||||||| ||||||| ||||||||||||||  |||| |||||||||   ||||||||||| ||   ||||||  |  ||| ||||  | | |
------------------------gtacatcgtgctcttcatattaatcttgtttagattttt--ttattgcattaaatcaatggcccctcttcgttttggtgacagCTATGGCAAGCTTTTGTTGGTATCGGAGCTCGTCGGGTGAAAGGCTACTATGAGTCTCTCCTTGCAGCTGATGATGAAAGAGAGAACAGCAAAGGTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76287464|gb|DV027032.1|DV027032
EST:     AATTAGAATGCTTAGCCCGTGATGGGCTTCCNATGGCCCTGAGAGGAGAG                         CTGTGGCAAGCTTT
genomic: AATTAGAATGCTTAGTCCGTGATGGGCTTCCAATGGCCCTGAGAGGAGAGgtacaacctg ... gtggtggcagCTGTGGCAAGCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaatttatcaactgttctattaaagagcaaatccttttgatatgtggtggcagCTGTGGCAAGCTTTTATTGGTATTGGAGCTCGTCGGGTCGAAGGGTACTATGAGGGCCTCCTTGCAGCGGACAGTGAAAGTCAAGACAACAAATATCCGG
                                    ttttgat  putative branch site (score: 4)
                ttctattaaa  TA-rich tract