Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAATATCCGGGATCTCCAACTTCGGAATGTGGTGACGGAAAACCAAAACCATCTCAAACATTTTCTTCTGAAAAATGGAAAGGGCAAATAGAGAAGgtatatatcattttattttttaaccgggttctgtattcatttgttgatgccatttcttactttggaacttttag

Basic information

species Zea mays
transcript GRMZM2G096470_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 3
-----CAACAAATATCCGGGATCTCCAACTTCGGAATGTGGTGACGGAAAACCAAAACCATCTCAAACATTTTCTTCTGAAAAATGGAAAGGGCAAATAGAGAAGgtatat--atcattttatttt--ttaaccgggtt---ctgtattcatttgttgatgccatttcttac---tttggaacttttag-------------------------------------
      |   || | |   | |    |   ||  | | |||  | || |||||||||  ||| |   |||||||||||||||| |||||||||||||||||||||||| ||  || |||| ||| |  |||   |  ||   || | | |||    || ||   || || |    ||||| | |  |                                       
TGAAAGAGAGAACAGCAAAGGTTCTGATTCTCCAACTATGG--AAGGGAAACCAAAAGGATCGC---CATTTTCTTCTGAAAAGTGGAAAGGGCAAATAGAGAAGgtagatggataatttaattgttattattggaatttaactctctccatgctatggtgattttactaatatatttgggagtcctgcgctaagaggttaatctgttgctttgggttctttttag