1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' | 40 5' 3' |
41 5' 3' | 42 5' 3' | 43 5' 3' | 44 5' 3' | 45 5' 3' | 46 5' 3' | 47 5' 3' | 48 5' 3' | 49 5' 3' | 50 5' 3' | 51 5' 3' | 52 5' 3' |
TTCAAGGATAGCAGAAACCATTCTGAGTCTTAGATTTTTCATCTTTCAATATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctgcttatatacaagcttatttttcttgtttccagtttttgtggaagttgtgtgattaattaataattagtgtacacaggcttttatttatgc...
species | Glycine max |
transcript | GLYMA20G38860.1 |
intron # | 50 |
splice site | 5' |
intron type | U2 |
EST: TGGTTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGEST: gi|58020049|gb|CX706791.1|CX706791
genomic: TGG-TATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
EST: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGEST: gi|207843762|gb|GD816565.1|GD816565
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
EST: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGEST: gi|193527584|gb|FK486334.1|FK486334
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
EST: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGEST: gi|193397230|gb|FK363306.1|FK363306
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
EST: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTEST: gi|9440070|gb|BE440581.1|BE440581
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTT
EST: ATCGTGTACTTATCTTAATGTGAAAGGAACAAGTACTTGACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGEST: gi|298188356|gb|HO035049.1|HO035049
genomic: ATCGTGTAC-AAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
EST: ATGGTATTGTGTACAAGCTTAACGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGACTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCEST: gi|58016476|gb|CX703218.1|CX703218
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTC
EST: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGEST: gi|58019591|gb|CX706333.1|CX706333
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
EST: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGEST: gi|208309805|gb|GE105095.1|GE105095
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
EST: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGEST: gi|19937309|gb|BQ081239.1|BQ081239
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
EST: ATGGTATTGTGTACAAGCTTAACGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGACTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAGEST: gi|58023673|gb|CX710414.1|CX710414
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
EST: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACG GTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
genomic: ATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctg ... ttttgtatagGTTTATGGTCTCTCATGGGTAGTTCTGGCTGTGCTTATAATTCTTTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAAGGATAGCAGAAACCATTCTGAGTCTTAGATTTTTCATCTTTCAATATGGTATCGTGTACAAGCTTAATGTGAAAGGAACAAGTACTTCACTGACGgtattacctgcttatatacaagcttatttttcttgtttccagtttttgtggaagttgtgtgattaattaataattagtgtacacaggcttttatttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA