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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCTCATATATTCTTTTGAGTATAAGCAGTTGGTTTATGGCTCTATCCTGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtattatctatttatctttgtattcttcctggcatgtctcatgagtcatgattattttccttcacggtgcttttttag

Basic information

species Glycine max
transcript GLYMA20G38860.1
intron # 48
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 48
lower sequence: LOC_Os03g02756.2 (Oryza sativa), 5'ss of exon 12
CACTCTCATATATTCTTTTGAGTATAAGCAGTTGGTTTATGGCTCTATCCTGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaag-tattatctatt-tatctttgtattcttcctggca--tgtctcatgagtcatgattattttccttcacggtgcttttttag
|| |    || ||| |  |    ||||| || |||||||||||  | || ||| | |||||||||||  ||||||| |||||||||||||| ||||| ||||||| |  ||   ||| |||   ||| ||  ||   | |  | | |    | |    |||||     || |     || | | ||
CAGTTGGCTACATTTTGCTTTCCATAAGTAGCTGGTTTATGGCAGTTTCTTGGCTTTTTGCTCCATACATATTCAATCCATCTGGATTTGAATGGCAGAAgtaagctgctaagcattctatgcatgtgttactctgcgtaattatatttgaaattcgaattatcaggattaaaatacctctctcag

upper sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 48
lower sequence: GRMZM2G453794_T01 (Zea mays), 5'ss of exon 11
CACTCTCATATATTCTTTTGAGTATAAGCAGTTGGTTTATGGCTCTATCCTGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta------tctatttatctttgtattcttcctggcatgtctcatgagtcatgattattttccttcacggtgcttttttag
|| |    |||||| |  |   ||||||||||||| |||||||  | || ||| | |||||||| |||||||| ||||||||||||||||| ||||| ||||||| |         | | | ||||| |||| | |   |   |  | |||| | | |   |   ||||   | |    |  | ||||
CAGTTGGCTATATTTTACTCTCTATAAGCAGTTGGATTATGGCATTGTCTTGGCTTTTTGCTCCCTATTTATTTAACCCATCTGGATTTGAATGGCAGAAgtaagcagccaagcattttgtgtatctatgtactataagttcaaattgtcatta-tgagattagatttcaaacccttctccctcttag

upper sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 48
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 45
CACTCTCATATATTCTTTTGAGTATAAGCAGTTGGTTTATGGCTCTATCCTGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtattatctatttatctttgt-attcttcctggcatgtctcatgagtcatgattattttccttcacggtgcttttttag
|  | || || || ||  |||   | ||||| |||||| ||||| | || ||| |||||||||| ||  ||||||||||  | |||||||||||||| ||||||||  |      |||| | | | ||  |   ||    ||  | ||  ||    | |    |  | |   |    ||| ||
CGGTTTCCTACATCCTGCTGACAGTTAGCAGCTGGTTTTTGGCTGTTTCTTGGCTGTTTGCTCCGTACCTATTCAACCCTGCCGGATTTGAGTGGCAGAAgtaagtggtgctatcttatttatatcatgttgagtgttgagtaacgtgtttctcattgaacaacaataaaattatgctttcag

upper sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 48
lower sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 43
CACTCTCATATATTCTTTTGAGTATAAGCAGTTGGTTTATGGCTCTATCCTGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtattatctatttatctttgtattcttcctggcatgtctcatgagtcatgattattttccttcacggtgcttttttag
|||| || || |||||| | || || ||||||||||| |||||||| || ||| | |||||||| ||||| ||||| |||||||| ||||||||||| |||||||||| || | | ||  ||| | |   || |||  |  ||||||  | || |    |||  || ||    |  ||||||
CACTATCGTACATTCTTCTTAGCATTAGCAGTTGGTTCATGGCTCTTTCTTGGCTTTTTGCTCCCTATTTGTTCAATCCATCTGGTTTTGAGTGGCAGAAgtaagtatcatttttctaattttctctc--tcatggatttgctcatgttttattaaccatttgttttac----cccttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208140913|gb|GD935255.1|GD935255
EST:     TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGG
genomic: TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGG
EST: gi|193376576|gb|FK343165.1|FK343165
EST:     TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGGACAAATTGGACTACTCTACCGAGGTG
genomic: TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGGACAAATTGG-CTACTCTACCGAGGTG
EST: gi|193717024|gb|FK649892.1|FK649892
EST:     TTTATTCAACCCATCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
genomic: TTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
EST: gi|193556241|gb|FK511464.1|FK511464
EST:     TATTTATTCAACCCATCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
genomic: TATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
EST: gi|193471075|gb|FK436974.1|FK436974
EST:     TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
genomic: TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
EST: gi|254331761|gb|GR843611.1|GR843611
EST:     TGGTTGTTTGCTCCATATTTATTCAACCCGTCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
genomic: TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
EST: gi|298188356|gb|HO035049.1|HO035049
EST:     TGGTTGTTTGCTCCATATTTATTCAACCCGTCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
genomic: TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
EST: gi|208089199|gb|GD888252.1|GD888252
EST:     TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATT
genomic: TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATT
EST: gi|193524673|gb|FK482292.1|FK482292
EST:     TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGG
genomic: TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGG
EST: gi|208259567|gb|GE058421.1|GE058421
EST:     TGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
genomic: TGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
EST: gi|193448333|gb|FK415914.1|FK415914
EST:     TTTATTCAACCCATCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
genomic: TTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
EST: gi|19937309|gb|BQ081239.1|BQ081239
EST:     TGGTTGTTTGCTCCATATTTATTCAACCCGTCTGGATTTGAGTGGCAAAA                         GGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG
genomic: TGGTTGTTTGCTCCATATTTATTCAACCCATCTGGATTTGAGTGGCAAAAgtaagtatta ... gcttttttagGGTGGTGGAAGATTTCAGAGATTGGACAAATTGGCTACTCTACCGAGGTGG