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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAAGCAACTGGCCGCGGGTTTGTTGTTCGCCATATCAAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtgctgtttttctaagtagacaatacatgataatatctggtgtgcttattgtgcgacattaagtttccaaaatttcaaattatgtacatgttg...

Basic information

species Glycine max
transcript GLYMA20G38860.1
intron # 47
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 47
lower sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 42
TATCAAGCAACTGGCCGCGGGTTTGTTGTTCGCCATATCAAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg---ctgtttttctaagtagacaat-acatgataatatctggtgtgcttattgtgcgacattaagtttccaaaatttcaaattatgtacatgttg--------------------------------------
||||||||||||||  | || ||||| || |||||||| |||||||| ||||| ||  | || ||||| ||||||||||||||||||||||      |    || | | |||   ||  ||      |  |  | | ||||| |  | || |  |   |||    |  |  || |  |  | ||   |   |                                       
TATCAAGCAACTGGTAGGGGATTTGTCGTCCGCCATATTAAATTTTCTGAGAATTATCGGCTTTACTCCCGTAGTCATTTTGTTAAAGGgtactctctctctctctctctctctctaaccacccgtctatttgtctgtggtgcggatgttatttgcatttattggtttattatcttcagatttgcttaaactagggacattatttatatttattactttggttatcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193380795|gb|FK346078.1|FK346078
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|208140913|gb|GD935255.1|GD935255
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|193376576|gb|FK343165.1|FK343165
EST:     ACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: ACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|207758289|gb|GD730183.1|GD730183
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|208043450|gb|GD839608.1|GD839608
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|193439831|gb|FK408078.1|FK408078
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTT
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTT
EST: gi|193435451|gb|FK401939.1|FK401939
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTAGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATG
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTT-GGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATG
EST: gi|254331761|gb|GR843611.1|GR843611
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCACTTCTGTTGATAGTATATCTTGCTTATGGCTCTAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|208128813|gb|GD927553.1|GD927553
EST:     GAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|208066301|gb|GD865960.1|GD865960
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|298188356|gb|HO035049.1|HO035049
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCACTTCTGTTGATAGTATATCTTGCTTATGGCTCTAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|208089199|gb|GD888252.1|GD888252
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|193524673|gb|FK482292.1|FK482292
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
EST: gi|208037175|gb|GD836126.1|GD836126
EST:     AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGG                         GTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA
genomic: AAATTTTCAGAGAACTACAGACTCTACTCTCGTAGTCATTTTGTTAAAGGgtgagacgtg ... ttgtcctcagGTTGGAGGTTGCGCTTTTGTTGATAGTATATCTTGCTTATGGCTATAATGA