1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAGgtgatatctgtgttcttgtttgaaatcttaacatgcttggttagaatctaattgacattctcaaaatctttattgtcaataccttattaatttttattttctcag
species | Glycine max |
transcript | GLYMA20G37170.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAG GCTACTGCCAAGAAAATTGTGAAAGCTGATGCTTATGTAGCTGEST: gi|207747615|gb|GD717940.1|GD717940
genomic: ACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAGgtgatatctg ... attttctcagGCTACTGCCAAGAAAATTGTGAAAGCTGATGCTTATGTAGCTG
EST: ACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAG GCTACTGCCAAGAAAATTGTGAAAGCTGATGCTTATGTAGCTGEST: gi|7691632|gb|AW759756.1|AW759756
genomic: ACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAGgtgatatctg ... attttctcagGCTACTGCCAAGAAAATTGTGAAAGCTGATGCTTATGTAGCTG
EST: ACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAG GCTACTGCCAAGAAAATTGTGAAAGCTGATGCTTATGTAGCTGEST: gi|298188346|gb|HO035039.1|HO035039
genomic: ACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAGgtgatatctg ... attttctcagGCTACTGCCAAGAAAATTGTGAAAGCTGATGCTTATGTAGCTG
EST: ACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAG GCTACTGCCAAGAAAATTGTGAAAGCTGATGCTTATGTAGCTG
genomic: ACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAGgtgatatctg ... attttctcagGCTACTGCCAAGAAAATTGTGAAAGCTGATGCTTATGTAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGATGGGAGTATTTATGTTACAGGACTTTCCATGTCAAAGgtgatatctgtgttcttgtttgaaatcttaacatgcttggttagaatctaattgacattctcaaaatctttattgtcaataccttattaatttttattttctcag
- - - - - - - - - - - - - - - - - - - - - - - GCTGAT