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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCAATAACATATATGAACTAGTTGGAGTTCCTGTAGTCACAGTGCAACTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaagtctctgaattttaggtccatgtagaaactataaagtgatgtacttttgctttgacagtaaagattgatcgattttcctttgatcattattgttcaacttcttcatgcacccttactatctgaatgacag

Basic information

species Glycine max
transcript GLYMA20G37170.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 10
TTTTCAATAACATATATGAACTAGTTGGAGTTCCTGTAGTCACAGTGCAACTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaagtctctgaattttaggtccatgtagaaact-ataaagtgatgtacttttgctttgacagtaaagatt---gatc--gattttcctttgatcat-tattgttcaact--tcttcatgcacccttactatctgaatgacag------------------------------------------------
||||  |||| || ||| |||||||||| || || || |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||  |||||||| |  |||| | | | | ||  |   |    || || || |    | || |||| ||  |  | ||||     |||   ||||| | |||| |  |   || |    ||  |  | | | |   |   |  |||     ||                                                 
TTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCACAGTGCAACTTAGATACAATGGCTGGGTCACAGAGTTACAGGATCTAGAACGGTCAAGgtgatcctctca-tctaaagtgtagtcactggcttatgaaattgaatgctcttgccttagctttgaagagcaaggattaagatttccttttgtttgtaccttatgtggctaattgttaagaattttatattcctgttcttcattaatcctttgcaagttggttactgaaaattccacattgggactggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236984|gb|BE805872.1|BE805872
EST:     CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaagtctct ... tgaatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|254340371|gb|GR858496.1|GR858496
EST:     CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaagtctct ... tgaatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|120496009|gb|EH224176.1|EH224176
EST:     CAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGNTTGGATAACCTTCTCTATACACCCGATGC
genomic: CAGGATCTAGAAAAGTCAAGgtaagtctct ... tgaatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|254340372|gb|GR858497.1|GR858497
EST:     TGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: TGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaagtctct ... tgaatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|151398068|gb|EV267946.1|EV267946
EST:     CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaagtctct ... tgaatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|120495894|gb|EH224061.1|EH224061
EST:     GGTTACAGAG-TGCAGGATCTAG-AAAGTTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATG
genomic: GGTTACAGAGTTGCAGGATCTAGAAAAG-TCAAGgtaagtctct ... tgaatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATG
EST: gi|193403381|gb|FK367703.1|FK367703
EST:     CTTAGGTACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAG                         GCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
genomic: CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaagtctct ... tgaatgacagGCGACTGGGGAAAGCTGTTGGGTTGGATAACCTTCTCTATACACCCGATGC
EST: gi|7691632|gb|AW759756.1|AW759756
EST:     CTTAGATACAATGGTTGGGTTACAGAGTTGCATGATCTAGANAAGTCAAG                         GCGACTGGGGAAAGCTGTTGG
genomic: CTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaagtctct ... tgaatgacagGCGACTGGGGAAAGCTGTTGG