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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTAGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCGTTTTTGTCCACAAATCAGCTTAATgtaatcatattgtatattctgttatcatgtttgtttagattacattacttggtcatcattcatcagtattatgcagaactagaaagtaatatatttgaatgcccaacataagtatatttgttaatttggttttcctcagcaggatggtcattgcacctaactttacatattgtttatgaacag

Basic information

species Glycine max
transcript GLYMA20G37170.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611643|gb|DB969031.1|DB969031
EST:     GGGCACCAATACACGGGATAAGGGCGTTTTTGTCCACAAATCAGCTTAAT                         ACTTATGATAAGGCTAGAAATGCTGTGGCTCTTGCACTCAGTCCAGTTGT
genomic: GGGCACCAATACACGGGATAAGGGCGTTTTTGTCCACAAATCAGCTTAATgtaatcatat ... ttatgaacagACTTATGATAAGGCTAGAAATGCTGTGGCTCTTGCACTCAGTCCAGTTGT
EST: gi|254340371|gb|GR858496.1|GR858496
EST:     GGCGTTTTTGTCCACAAATCAGCTTAAT                         ACTTATGATAAGGCTAGAAATGCTGTGGCTCTTGCACTCAGTCCAGTTGTC
genomic: GGCGTTTTTGTCCACAAATCAGCTTAATgtaatcatat ... ttatgaacagACTTATGATAAGGCTAGAAATGCTGTGGCTCTTGCACTCAGTCCAGTTGTC
EST: gi|208163803|gb|GD961497.1|GD961497
EST:     GGGCACCAATACACGGGATAAGGGCGTTTTTGTCCACAAATCAGCTTAAT                         ACTTATGATAAGGCTAGAAATGCTGTGGCTCTTGCACTCAGTCCAGTTGTC
genomic: GGGCACCAATACACGGGATAAGGGCGTTTTTGTCCACAAATCAGCTTAATgtaatcatat ... ttatgaacagACTTATGATAAGGCTAGAAATGCTGTGGCTCTTGCACTCAGTCCAGTTGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTAGATTTTCGCTTCCCAATTGGGGCACCAATACACGGGATAAGGGCGTTTTTGTCCACAAATCAGCTTAATgtaatcatattgtatattctgttatcatgtttgtttagattacattacttggtcatcattcatcagtattatgcagaactagaaagtaatatatttgaatgcccaacataagtatatttgttaatttggttttcctcagcaggatggtcattgcacctaactttacatattgtttatgaacag

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