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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttagctccttctttctctgtttgtattaatgagctactgatatcttaataattttgaaatcggatgttgtggtaatatatagtaaagttacttttgaattccttgatccttagttagtctgttttgttattcaggtgttgattgcatcaggatgttatgactaatgtattctatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTG

Basic information

species Glycine max
transcript GLYMA20G37170.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37170.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 3
gtttagctccttctttctctgtttgtattaatgagctactgatatcttaataattttgaaatcggatgttgtggtaatatatagtaaagttacttttgaattccttgatccttagttagtctgttttgttattcaggtgttgattgcatcaggatgttatgactaatgtattctatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTG
                                                                                                 |  ||   |  || |  |||||| |||||   ||||    |  || || |||    ||||  | |  |  ||  |   |  ||||||||||||||||||| || ||| | || |||||||||||||| ||||||||||| || | | ||||||| || |||||||||||||| ||||||||||| |
-------------------------------------------------------------------------------------------------gtgtttactcctcttctgttagt-tgtttatatatttgatt--tggttacat--acatgt-gtaatcatcgtgat---tgtttcagGTGGATATATATGATTCGAGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTTTCTTCG

upper sequence: GLYMA20G37170.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 2
gtttagctccttctttctctgtttgtattaatgagctactgatatcttaataattttgaaatcggatgttgtggtaatatatagtaaagttacttttgaattccttgatccttagttagtctgttttgttattcaggtgttgattgcatcaggatgttatgact-----aatgtattctatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTG
|||| | |  |   |     | |    |  |||      ||  || |     | ||| |||    |  |        | |  ||  |||||  |||  || |       |||| | |  | |   || |   |  | || |  || ||||||||    ||   |     ||||  ||   |  ||||||| |||||||||||||||||| |||| |||||||| ||||| || ||||||||||| | | |||| |||||||||||||||||| |||| || |||||||
gtttggattatatatgtaaagatatgttggatgtatctttggcatttatcatactttcaaacaaaacatgaattagtttttcagctaagtttgtttcaaaatggaattcccttggatgattttaattttggctttgctgatt-ttccatcaggagaaaattggtttataaatggtttggtttgttcagGTAGATATATATGAGTCAAGGTCTTTCATTGGTGGAAAAGTGGGCTCTTTTGTTGATAGACGTGGAAATCACATTGAAATGGGACTGCACGTGTTCTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716760|gb|BW682242.1|BW682242
EST:     GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAG                         GTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
genomic: GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAGgtttagctcc ... tatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
EST: gi|209724167|gb|BW659701.1|BW659701
EST:     GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAG                         GTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
genomic: GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAGgtttagctcc ... tatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
EST: gi|20497971|gb|BQ272901.1|BQ272901
EST:     GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAG                         GTGGATATATATGAGTC
genomic: GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAGgtttagctcc ... tatcattcagGTGGATATATATGAGTC
EST: gi|151412615|gb|EV282427.1|EV282427
EST:     GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAG                         GTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
genomic: GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAGgtttagctcc ... tatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
EST: gi|213611643|gb|DB969031.1|DB969031
EST:     GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAG                         GTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
genomic: GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAGgtttagctcc ... tatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
EST: gi|213605385|gb|DB964580.1|DB964580
EST:     GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAG                         GTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
genomic: GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAGgtttagctcc ... tatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
EST: gi|209703397|gb|BW676224.1|BW676224
EST:     GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAG                         GTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
genomic: GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAGgtttagctcc ... tatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
EST: gi|209697794|gb|BW663938.1|BW663938
EST:     GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAG                         GTGGATATATATGAGTCAAGGCCTTTTAT
genomic: GACTTGCAGGCATGTCAACTGCAGTGGAACTCTTGGATCAAGGACACGAGgtttagctcc ... tatcattcagGTGGATATATATGAGTCAAGGCCTTTTAT
EST: gi|193421144|gb|FK389135.1|FK389135
EST:     CATGTCAACTTGTCAGTGGAACTCTTGGATCAAGGACACGAG                         GTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT
genomic: CATGTCAAC-TG-CAGTGGAACTCTTGGATCAAGGACACGAGgtttagctcc ... tatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcaggtgttgattgcatcaggatgttatgactaatgtattctatcattcagGTGGATATATATGAGTCAAGGCCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTG
                                gactaat  putative branch site (score: 2)
                                          ttctatc  putative PPT
                                   taatgtatt  TA-rich tract