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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTGgttaacgaattccatttatcttattctgtttttgatatttttaccattgatttagtagtgacatgaaacgtttgcttccaaagtaggatgcttatgcaca...

Basic information

species Glycine max
transcript GLYMA20G37170.2
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236984|gb|BE805872.1|BE805872
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTT---Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|120496009|gb|EH224176.1|EH224176
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|213602074|gb|DB981924.1|DB981924
EST:     CCCTTACCAAATGACGAAATCTA-TGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGATGTT
genomic: CCCTTACCAAATGACGAAAT-TATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|214007199|gb|DB986191.1|DB986191
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|254340372|gb|GR858497.1|GR858497
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|23064112|gb|BU578885.1|BU578885
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|15662004|gb|BI699375.1|BI699375
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|208093644|gb|GD896491.1|GD896491
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|151398068|gb|EV267946.1|EV267946
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|209703398|gb|BW676225.1|BW676225
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|120495894|gb|EH224061.1|EH224061
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|23064255|gb|BU579028.1|BU579028
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAT                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
EST: gi|120496110|gb|EH224277.1|EH224277
EST:     GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTTTAG                         CGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT
genomic: GCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGG--TT-Ggttaacgaat ... taggttttagCGCTGTTCCCATCATCTCAAGGTTTGGAAGTCACTTGGTCTTCTGTTGTT