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gtttgtaatttcaatttctcatcaattgtcgatgttacacttatattagcagtatctttttttccccttctctttatctattatttttttttcatttttgggagtgttggaataatttggaaattaaaggcatagttagtttggggagtgtcacaacgtttagataataattcttaaactgtaagtttgacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCTGAAAGTGGCAATTATTGGAGCTGGACTTGCAGGCATGTCAACTGCAGT
species | Glycine max |
transcript | GLYMA20G37170.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|209724167|gb|BW659701.1|BW659701
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|20497971|gb|BQ272901.1|BQ272901
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|151412615|gb|EV282427.1|EV282427
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|213611643|gb|DB969031.1|DB969031
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|213605385|gb|DB964580.1|DB964580
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|209707945|gb|BW657040.1|BW657040
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACEST: gi|209703397|gb|BW676224.1|BW676224
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAAC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|209697794|gb|BW663938.1|BW663938
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|207711676|gb|GD694152.1|GD694152
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|213600322|gb|DB964360.1|DB964360
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCEST: gi|213613973|gb|DB960952.1|DB960952
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
EST: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACG CGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
genomic: TCGCCTTCGTTGCTCCTTAGATGCTAATGTTTCCGACATGAGCGTTAACGgtttgtaatt ... gacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGC
gggagtgtcacaacgtttagataataattcttaaactgtaagtttgacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCTGAAAGTGGCAATTATTGGAGCTGGACTTGCAGGCATGTCAACTGCAGT
gtttgac putative branch site (score: 4)
tttagataataattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaatttcaatttctcatcaattgtcgatgttacacttatattagcagtatctttttttccccttctctttatctattatttttttttcatttttgggagtgttggaataatttggaaattaaaggcatagttagtttggggagtgtcacaacgtttagataataattcttaaactgtaagtttgacatggcagCGCCAAAAGGGTTGTTTCCTCCGGAACCAGAACATTATCGAGGACCGAAGCTGAAAGTGGCAATTATTGGAGCTGGACTTGCAGGCATGTCAACTGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG