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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAAAGACCGAGGCTTCCCTTTTGCGAATGCTGAAGGGTTCACCAGATGTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAGgtataattttagatacaaaaatattgccaccatcagcatccaaatttcttcctatttagattctcattcattgctggaacag

Basic information

species Glycine max
transcript GLYMA20G37170.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 5'ss of exon 7
CCACAAAGACCGAGGCTTCCCTTTTGCGAATGCTGAAGGGTTCACCAGATGTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAGgtataattttagatacaaaaatattgccaccatcagcatccaaatttcttcctatttagattctcattcattgctggaacag----
||||||| || ||||| ||  | || || ||||| ||||||||||| ||||||||||||||||| || ||    |||||||| |||||||| || || |||||| ||   | | ||  |||| |      ||| || ||  |    |   ||  |  |   |  |||   ||     | |      
CCACAAAAACAGAGGCATCTTTATTACGCATGCTAAAGGGTTCACCTGATGTTTATCTGAGTGGTCCAATAAAGAAGTACATAACAGACAGGGGTGGTAGgtatgatggcaaagaccgaaatttgttttgcattagtatgta---ctgcaccgttgaaagcttacatcatttaacaaatccttcag

upper sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G454952_T01 (Zea mays), 5'ss of exon 7
CCACAAAGACCGAGGCTTCCCTTTTGCGAATGCTGAAGGGTTCACCAGATGTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAGgtataattttagatacaaaaatattgccaccatcagcatccaaatttcttcctattt--agattctcattcattgctggaacag----
|||||||||| ||||| ||||| || || ||||| ||||||||||| ||||||||  | |||||||| ||    ||||| || |||||||| || || ||||||  |   ||| || ||  | ||      |      |    | | ||    | ||  ||| |  |||    ||    | |      
CCACAAAGACAGAGGCATCCCTGTTACGCATGCTAAAGGGTTCACCTGATGTTTACTTAAGTGGCCCAATAAAGAAGTATATAACAGACAGGGGTGGTAGgtatggtgacagagaccaagttttttttgtgaaatttctgtttactgctgtagaattcaagacttacatcttatgacaaatccttcag

upper sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 7
CCACAAAGACCGAGGCTTCCCTTTTGCGAATGCTGAAGGGTTCACCAGATGTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAGgtataattttagatacaaaaatattg--ccaccatca-gcatccaaatttc-ttcctatttagattctcattcattg-ctggaacag-------------
|||| ||||| || ||||||||  |||| ||||| || ||||| |||||||| ||  |||||||||||||| || |||| |||||||| | ||||||||||||  |   |  ||    |||  ||     | ||| | |     | ||||| ||  |  ||     ||      ||| ||  |   |             
CCACTAAGACAGAAGCTTCCCTACTGCGCATGCTTAAAGGTTCTCCAGATGTATACTTGAGTGGCCCCATCAGACAGTATATCACAGATAAAGGGGGCAGgtacgaacgtgaatgtggaaactttaaatgaacatgatgtgattatatttcattattggttgtgcccttgaggtttggctcaagtggtaaagggatgggg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340371|gb|GR858496.1|GR858496
EST:     GTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAG                         GTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGA
genomic: GTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAGgtataatttt ... gctggaacagGTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGA
EST: gi|207747615|gb|GD717940.1|GD717940
EST:     GTTTATCTGAGTGGCCCCATCCGAAAGTGCATCACAGACAGAGGGGGCAG                         GTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGA
genomic: GTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAGgtataatttt ... gctggaacagGTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGA
EST: gi|7691632|gb|AW759756.1|AW759756
EST:     GTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAG                         GTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGA
genomic: GTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAGgtataatttt ... gctggaacagGTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGA
EST: gi|298188346|gb|HO035039.1|HO035039
EST:     GTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAG                         GTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGA
genomic: GTTTATCTGAGTGGCCCCATCCGAAAGTACATCACAGACAGAGGGGGCAGgtataatttt ... gctggaacagGTTCCATCTTAGGTGGGGATGTAGAGAAGTACTTCATGACAAATCTGCTGA