1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagctgtttttacttcatctctaaaacctgttttcttcttccctcttttttggccatgaaacctgtactattgactttatttttcgtgtacattgtatctgtccatttaataacttctacttcttcaatgcttggatgactagGTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGAG
species | Glycine max |
transcript | GLYMA20G37170.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGATGAAGAAG GTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTTEST: gi|151412615|gb|EV282427.1|EV282427
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGATGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTT
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGATGAAGAAA GTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTTEST: gi|213611643|gb|DB969031.1|DB969031
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGATGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTT
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGATGAAGAAG GTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTTEST: gi|193421144|gb|FK389135.1|FK389135
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGATGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTT
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGATGAAGAAG GTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTT-GTT
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGATGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTT
tacattgtatctgtccatttaataacttctacttcttcaatgcttggatgactagGTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGAG
taataac putative branch site (score: 1)
atttaataacttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgtttttacttcatctctaaaacctgttttcttcttccctcttttttggccatgaaacctgtactattgactttatttttcgtgtacattgtatctgtccatttaataacttctacttcttcaatgcttggatgactagGTGGGTGCGGATAACAATCTACTTGTAAAGGATCACACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG