Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcgagtaacttttcatggtattaaaattttgtaaccatcgtgcatataatgtgtgatttagtattgaccttctaagaatataatgttatatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTG

Basic information

species Glycine max
transcript GLYMA20G37170.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236984|gb|BE805872.1|BE805872
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|120496009|gb|EH224176.1|EH224176
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|213602074|gb|DB981924.1|DB981924
EST:     ACAAGGATCATTGCTCCA                         ATGTGCCCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: ACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|254340372|gb|GR858497.1|GR858497
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|23064112|gb|BU578885.1|BU578885
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|151398068|gb|EV267946.1|EV267946
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|120495894|gb|EH224061.1|EH224061
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|23064255|gb|BU579028.1|BU579028
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|120496110|gb|EH224277.1|EH224277
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataatgtgtgatttagtattgaccttctaagaatataatgttatatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTG
                  tattgac  putative branch site (score: 2)
                          ttctaagaatataatg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagcgagtaacttttcatggtattaaaattttgtaaccatcgtgcatataatgtgtgatttagtattgaccttctaagaatataatgttatatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAATTATTGCAAGGGTAGCAAAACAGGTTG

- - - - - - -ttcatgg
- - - - - - - - - - - - - - - -tgtaacc
- - - - - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtga