1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ctttctttcttatcattaataatgttatatttgtacttttatcaaacgaaagcgtaaaaggggcatttacaaatttactggattctaccaatcttttcagGCTTTCTTGAAACATATAGATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG
species | Glycine max |
transcript | GLYMA20G36200.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG GCTTTCTTGAAACATATAGATTTCAACGTGGTTCGTTGTGCTGTAATTGCAEST: gi|26058966|gb|CA801880.1|CA801880
genomic: GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAGgtaaatcctg ... atcttttcagGCTTTCTTGAAACATATAGATTTCAACGTGGTTCGTTGTGCTGTAATTGCA
EST: GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAA GCTTTCTTGAAAEST: gi|254319823|gb|GR830847.1|GR830847
genomic: GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAGgtaaatcctg ... atcttttcagGCTTTCTTGAAA
EST: GCTTTGGATAAGTTCTTTCAGA-TGTTTTGCAG -CTTTCTTGAAACATATAGATTTCA-CGTG
genomic: GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAGgtaaatcctg ... atcttttcagGCTTTCTTGAAACATATAGATTTCAACGTG
acgaaagcgtaaaaggggcatttacaaatttactggattctaccaatcttttcagGCTTTCTTGAAACATATAGATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG
tcttttc CT-rich tract
atttacaaatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttctttcttatcattaataatgttatatttgtacttttatcaaacgaaagcgtaaaaggggcatttacaaatttactggattctaccaatcttttcagGCTTTCTTGAAACATATAGATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG
- - - - - - - - - - - - - - - - - - - - - -aaacgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttactgg