Sequence
atgc intronic sequence ATGC exonic sequence...aaaaatttctttaatgatttgtatgtgcataagtgcggacaggattttggtacagagatgtttataatgcttatattttaaatctctgtttctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAGGCAGAACGAAGACAGTTGCGACCTATTATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAG
Basic information
species | Glycine max |
transcript | GLYMA20G36200.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G36200.1 (Glycine max), 3'ss of exon 10
lower sequence: AT4G27650.1 (Arabidopsis thaliana), 3'ss of exon 11
-------------------aaaaatttctttaat------gatttgtatgtgcataagtgcggacaggattttggtacagagatgtttataatgcttatattttaaatctct-----gtttc-tgtttc-agGATCAGTTTCACCGTCACTTATTTTTGGAGGCAGAACGAAGACAGTTGCGACCTATTATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAG
||| | || | ||| | ||| | | || | | ||| || | | || | | ||| | | | | ||||| ||| || ||||||||||||| || |||||||| ||||| |||||| ||||||| || ||||||||||||| ||||||||||| || || | ||||| |||| || |
gttttttttttggtcactcaaagactttctaaatttacgtggtttattatttttcaaattgcagctggacca-ggcttacaaatttcccatacatatatgacacagaccgtttgattgtttcatgtctccagGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACTGAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTG
upper sequence: GLYMA20G36200.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 3'ss of exon 10
aaaaatttctttaatgatttgtatgtgcataagtgcggacaggattttggtacagagatgt----ttataatgcttatattttaaatctctgtttctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAGGCAGAACGAAGACAGTTGCGACCTATTATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAG
| | || ||| | |||| | | | ||||| ||||| | | |||| | || | || | | | ||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||| || || |||||||||| ||||| |||||||| |||||||||||||| || |
-tatagtttcttaccaaagaccatgtccctctccataaat---attttaatacaggattatattcttatttgatctgaatggtttattattatgtatgtttcagGATCAATTTCATCGTCATTTATTGTTGGAGGCAGAACGAAGACAGCTGAGATCTATTATTGAGAATAAGTCACGCATAATTCTTGTGCATACGTCCTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208341582|gb|GE136674.1|GE136674EST: ATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTTGGAGGCAGAACGAAGACAGTTGCG
genomic: ATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTT-GGAGGCAGAACGAAGACAGTTGCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttggtacagagatgtttataatgcttatattttaaatctctgtttctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAGGCAGAACGAAGACAGTTGCGACCTATTATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAG
tctctgtttctgtttc CT-rich tract
agatgtttataatgct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaatttctttaatgatttgtatgtgcataagtgcggacaggattttggtacagagatgtttataatgcttatattttaaatctctgtttctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAGGCAGAACGAAGACAGTTGCGACCTATTATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAG
- - - - - - - tgatttg
- - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctt