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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCTTGAAACATATAGATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaattgttccctgtttgtgttatttgggcttcattcgtggtgaatatttacaaatttgatacaatgtgtgagtgtgtctgcatgtatgcattact...

Basic information

species Glycine max
transcript GLYMA20G36200.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36200.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g56480.1 (Oryza sativa), 5'ss of exon 9
GCTTTCTTGAAACATATAGATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagt---aattgttccctgtttgtgttatttgggcttcattcgtggtga-atattta-caaatt-tgatacaatgt-gtgagtgt-gtctgcatgtatgcattact
|||||| |||| ||||| |||||  | || || |  ||||||||||||||||| ||||| ||||| |||||||     |  |  |  | ||||  ||| | |  | |   || ||    |  | |  | || ||  ||||||||| |  ||| | | || |   | |||        
GCTTTCCTGAAGCATATTGATTTTGAAGTAGTCCAATGTGCTGTAATTGCAAGCCCAGGTTTTACTAAGgtaatcctcacgtacttacagttttggttttataagttggtttggtatccatgtgtcaagcacatgatgatacaattttatgaatttagtttttgtttat--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208341582|gb|GE136674.1|GE136674
EST:     ATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG                         GATCAGTTTCACCGTCACTTATTTTTTGGAGGCAGAACGAAGACAGTTGCG
genomic: ATTTCAACGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTT-GGAGGCAGAACGAAGACAGTTGCG