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...agagctgcttcatggaagtgaatgaaatttctgcacaaaaatttatgctctagttttgtttgttttaaattgaatgtgccaattttatattgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTGATCTTGAAGACATTGAGATGTGATGGACACAATGTTGGTCAAGCATGTT
species | Glycine max |
transcript | GLYMA20G36200.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTGEST: gi|208314853|gb|GE111347.1|GE111347
genomic: ATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTG
EST: ATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTGEST: gi|151400331|gb|EV270145.1|EV270145
genomic: ATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTG
EST: TTCAGGAGGCTCTGTCCATGTATTTTCGTCCACGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTGEST: gi|12772211|gb|BG237138.1|BG237138
genomic: TTCAGGAGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTG
EST: TTCAGGAGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTG
genomic: TTCAGGAGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTG
tgctctagttttgtttgttttaaattgaatgtgccaattttatattgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTGATCTTGAAGACATTGAGATGTGATGGACACAATGTTGGTCAAGCATGTT
tattgat putative branch site (score: 3)
ttttgtttgttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagctgcttcatggaagtgaatgaaatttctgcacaaaaatttatgctctagttttgtttgttttaaattgaatgtgccaattttatattgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCAATTCTTCGATTTCCTCTCCCTGATCTTGAAGACATTGAGATGTGATGGACACAATGTTGGTCAAGCATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - ctgcttc
- - - - - - - - - tgaatga
- - - - - - - - - - - - - - - -tgcacaa
- - - - - - - - - - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtg