1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATAGGAGCTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctcttaaatcattatgattcctgttactgacttactgttccttttgtgttgttaaatatgcgcttcacatgcatacaagctaggccttttgctt...
species | Glycine max |
transcript | GLYMA20G36200.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGEST: gi|298199419|gb|HO042782.1|HO042782
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGEST: gi|298190319|gb|HO032440.1|HO032440
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGACTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGEST: gi|26058966|gb|CA801880.1|CA801880
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGEST: gi|151406328|gb|EV276143.1|EV276143
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGEST: gi|254319823|gb|GR830847.1|GR830847
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGEST: gi|18040102|gb|BM308396.1|BM308396
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGEST: gi|7458586|gb|AW666036.1|AW666036
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTNTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGEST: gi|207805336|gb|GD777342.1|GD777342
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGATEST: gi|298196568|gb|HO041311.1|HO041311
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGAT
EST: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
genomic: CTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttctgcagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGGAGCTTTTCATACTTTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAGgtgtttctcttaaatcattatgattcctgttactgacttactgttccttttgtgttgttaaatatgcgcttcacatgcatacaagctaggccttttgctt
- - - - - - - - - - - - - - - CTGCAG