Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACCGTCACTTATTTTTGGAGGCAGAACGAAGACAGTTGCGACCTATTATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAGGATACAAgtatggtttgctttctttatttgcctgttctctgttcctacttttctaggactttacaaaagctatgttaggtaattagaattgacacaaacacgtgaag...

Basic information

species Glycine max
transcript GLYMA20G36200.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36200.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G27650.1 (Arabidopsis thaliana), 5'ss of exon 12
TTCACCGTCACTTATTTTTGGAGGCAGAACGAAGACAGTTGCGACCTATTATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAGGATACAAgtatggtttgctttctttatttgcctgttctctgttcctacttttctaggactttacaaaagctatgttaggtaattagaattgacacaaaca-cgtgaag--
|||| || |||||||| ||||| |||||| |||||||  || ||||||||||||| ||||||||||| || ||  | ||||| ||||  || ||||| | |||   ||| || |     | | | ||    ||||    | |||  |  | | |   ||||  ||  ||  ||  | ||| |  |   | | | | || |   
TTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACTGAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTGGATATAGgtagtattt-ctgtgaaattgttcatgaagcctgtcaaaattttgttctgccatgctaaaa--tacattgagtgctcagagtcaaatgatataacatgcaatt

upper sequence: GLYMA20G36200.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 5'ss of exon 11
TTCACCGTCACTTATTTTTGGAGGCAGAACGAAGACAGTTGCGACCTATTATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAGGATACAAgtatggtt--tgctttctttattt-----gcctgttctctgttcctacttttctaggactttacaaaagctatgttaggtaattagaattgacacaaacacgtgaag
|||| ||||| ||||| ||||||||||||||||||||| || || |||||||||| ||||| |||||||| ||||||||||||||    || |||||||||||||||   |   ||||||| ||      |  | | | || |   | |  |     |  ||    ||  | |  ||  || |   ||||            |||  
TTCATCGTCATTTATTGTTGGAGGCAGAACGAAGACAGCTGAGATCTATTATTGAGAATAAGTCACGCATAATTCTTGTGCATACGTCCTCTGGATACAAgtatggtcactttcttctttacttttggtactcgctatttgatttcagtaatgagtaatgttttggaactttt--taaatactctcaattttttt---tttttga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400331|gb|EV270145.1|EV270145
EST:     ATCATTCTTGTGCATACAAGTTCAGGATACAA                         ACATAGCTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTAATAAA
genomic: ATCATTCTTGTGCATACAAGTTCAGGATACAAgtatggtttg ... ttatctgtagACATAGCTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTAATAAA
EST: gi|105632795|gb|DW246539.1|DW246539
EST:     ATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAGGATACAA                         ACATAGCTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTAATAAA
genomic: ATTGAAAATAAATCACGCATCATTCTTGTGCATACAAGTTCAGGATACAAgtatggtttg ... ttatctgtagACATAGCTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTAATAAA