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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATAGCTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTAATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaaaaccaaagcagtacaccttttttacttttccatttggccctgcagcccatgttgaatattttccatgttctgtttacttatcttctattgagtctggaacatgttttgtttacttatcttctactgagcctggaataagctttattctttgttttccttcag

Basic information

species Glycine max
transcript GLYMA20G36200.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36200.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 5'ss of exon 12
ACATAGCTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTAATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaaaaccaaagcagtacaccttttttacttttccatttggccctgcagcccatgttgaatattttccatgttctgtttacttatcttctattgagtctggaacatgttttgtttacttatcttctactgagcctggaataagctttattctttgttttccttcag
 ||||| ||||| |||||||||||||| |||||||| ||||   | ||||| ||||| ||||||||||||||||||  ||  ||| |           | |  || || | | ||| || | ||    |  || |||  | | ||||    |||  ||   | |       ||  | |  | |  | | |||  |  |   ||    |||      || ||   |  ||||     ||  |  ||
GCATAGTTTAAAAGAGGTTTTGGATGCACCAAATGTGATGAACATGATAAAGGATACAAAAGCAGCACAAGAGgtaggatgcaaatcc--------ttcttggttaacatcttcatctgtctcttt--ctgattttgtttctcttcctaactcttgttgtctgttcaaacctgtttgttaagcgagctctgtccatct---ttgccttgaa---ataacaaatatctttctccccctttttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400331|gb|EV270145.1|EV270145
EST:     ATGCTCCAAATGTCATGAGTTTAATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTAATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|105632795|gb|DW246539.1|DW246539
EST:     ATGCTCCAAATGTCATGAGTTTAATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTAATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT