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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctctattgtaagatatcagtgaatgaattcaataatttgaatgatacgaatctaaggcatcctcctcccttttgtag

Basic information

species Glycine max
transcript GLYMA20G36200.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36200.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os04g56480.1 (Oryza sativa), 5'ss of exon 7
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctctattgtaagatatcagtgaatgaattcaataatttgaatgatacgaatctaaggcatcctcctcccttttgtag
 || || || ||  |  | || || |||||||| |||||||| || ||||| ||||| |||||||||||||||   |||||    ||   |||       |||||  ||| |   ||  |||  ||  |   || |  | || |    |  |   | |||||||||
CATAACAGTAACCAGAGCACGTATTGAAACATCTATTCCTCGGAAGCATGGCCCTGCGATTGCTGGTTATGAGTCGgtatggaaactggttct-------gatatt-gtgta---atctaattgttctatctattcccaactgactt-tgttttgctcttttgtag

upper sequence: GLYMA20G36200.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G044011_T01 (Zea mays), 5'ss of exon 8
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctctattgtaagatatcagtgaatgaattcaataatttgaatgatacgaatctaaggcatcctcctcccttttgtag
 || || |  || ||  | || || ||||||||||||||| | || ||||| |||||||||||||| || ||||  |||| ||| ||   ||| ||     |   || |||   ||||      |||   |  |||  || |   |||   |      || |||||
CATAACAGCAACCCGGGCACGTATTGAAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcactggttctgttaattaactaca-tgacaaaattgttgtgtttacttcctactgattt---gcactttttgttgttctgtag

upper sequence: GLYMA20G36200.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G27650.1 (Arabidopsis thaliana), 5'ss of exon 9
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctctattgtaagatatcagtgaatgaattcaata-atttgaatgatacgaatctaaggcatcctcctcccttttgtag
| ||||   ||  ||| | || ||||||||||| |||||| | || ||||| ||||||||||||||||| |||   ||||| ||  || || | | || | ||||  |   |  | |    || || |  ||  |   ||| || | |||  |   |   | |||||
TGTGACAAGTAGCCGTGCACGAATAGAAACATCCATTCCTAGGAAGCATGGACCTGCAATTGCTGGTTACGAGTCTgtatgttccttcactgtttcgtcatatatgtgcccaaaattcgtttacatatttatcctttcaatttatgtcattttttgcttctctgtag

upper sequence: GLYMA20G36200.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 5'ss of exon 8
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgat-ctctctctctattgtaagatatcagtgaatgaat-tcaataatttgaatgatacgaatct-aaggcatcctcctcccttttgtag-------
  | ||  ||||||| || ||||||||| | |||||||||||||||||||||||||| |||||||||||||||  |||||| | ||   |||      | |  |||   | || | |  | | |  ||   |  ||     |   ||  | | |    |  |  | ||        
CCTTACAATTACTCGCTCCCGGATAGAAGCTTCAATTCCTCGCAAACATGGGCCTGCTATTGCTGGTTATGAGGCAgtatgttgcttgatcttgtccatcaactatttctaaaagtaccttagtggttgttagcatgtttgttagaaaacttacaatccaatgatataattcattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208341582|gb|GE136674.1|GE136674
EST:     TTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: TTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|26058966|gb|CA801880.1|CA801880
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAA
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|151406328|gb|EV276143.1|EV276143
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTT
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtagGCTTTGGATAAGTT
EST: gi|254319823|gb|GR830847.1|GR830847
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGA-TGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|18040102|gb|BM308396.1|BM308396
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         A
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtag-
EST: gi|18040102|gb|BM308396.1|BM308396
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         A
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtag-